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Report for CCDS75420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75420.1 Public Homo sapiens 6 POU5F1 24 110 108 CCDS HistoryNCBI Gene:5460Re-query CCDS DB by CCDS ID:75420.1Re-query CCDS DB by GeneID:5460See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441888.7 ENSP00000389359.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441888.7Link to Ensembl Protein Viewer:ENSP00000389359.2Re-query CCDS DB by Nucleotide ID:ENST00000441888Re-query CCDS DB by Protein ID:ENSP00000389359
Original member Current member EBI ENST00000471529.6 ENSP00000425083.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471529.6Link to Ensembl Protein Viewer:ENSP00000425083.1Re-query CCDS DB by Nucleotide ID:ENST00000471529Re-query CCDS DB by Protein ID:ENSP00000425083
Original member Current member EBI ENST00000512818.5 ENSP00000425479.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512818.5Link to Ensembl Protein Viewer:ENSP00000425479.1Re-query CCDS DB by Nucleotide ID:ENST00000512818Re-query CCDS DB by Protein ID:ENSP00000425479
Original member Current member EBI ENST00000513407.1 ENSP00000475512.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513407.1Link to Ensembl Protein Viewer:ENSP00000475512.1Re-query CCDS DB by Nucleotide ID:ENST00000513407Re-query CCDS DB by Protein ID:ENSP00000475512
Original member Current member NCBI NM_001285986.2 NP_001272915.1 Accepted alive Link to Nucleotide Sequence:NM_001285986.2Link to Protein Sequence:NP_001272915.1Re-query CCDS DB by Nucleotide ID:NM_001285986Re-query CCDS DB by Protein ID:NP_001272915Link to BLAST:NP_001272915.1

Chromosomal Locations for CCDS 75420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31164601 31164867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31165128 31165286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31165571 31165639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGTGTAAGCTGCGGCCCTTGCTGCAGAAGTGGGTGGAGGAAGCTGACAACAATGAAAATCTTCAGGAGA
TATGCAAAGCAGAAACCCTCGTGCAGGCCCGAAAGAGAAAGCGAACCAGTATCGAGAACCGAGTGAGAGG
CAACCTGGAGAATTTGTTCCTGCAGTGCCCGAAACCCACACTGCAGCAGATCAGCCACATCGCCCAGCAG
CTTGGGCTCGAGAAGGATGTGGTCCGAGTGTGGTTCTGTAACCGGCGCCAGAAGGGCAAGCGATCAAGCA
GCGACTATGCACAACGAGAGGATTTTGAGGCTGCTGGGTCTCCTTTCTCAGGGGGACCAGTGTCCTTTCC
TCTGGCCCCAGGGCCCCATTTTGGTACCCCAGGCTATGGGAGCCCTCACTTCACTGCACTGTACTCCTCG
GTCCCTTTCCCTGAGGGGGAAGCCTTTCCCCCTGTCTCCGTCACCACTCTGGGCTCTCCCATGCATTCAA
ACTGA

Translation (164 aa):
MCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPKPTLQQISHIAQQ
LGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSS
VPFPEGEAFPPVSVTTLGSPMHSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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