NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6783.1 Public Homo sapiens 9 SUSD1 24 110 108 CCDS HistoryNCBI Gene:64420Re-query CCDS DB by CCDS ID:6783.1Re-query CCDS DB by GeneID:64420See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6783.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374270.8 ENSP00000363388.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374270.8Link to Ensembl Protein Viewer:ENSP00000363388.4Re-query CCDS DB by Nucleotide ID:ENST00000374270Re-query CCDS DB by Protein ID:ENSP00000363388
Original member Current member NCBI NM_022486.5 NP_071931.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022486.5Link to Protein Sequence:NP_071931.2Re-query CCDS DB by Nucleotide ID:NM_022486Re-query CCDS DB by Protein ID:NP_071931Link to BLAST:NP_071931.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071931.2 747 Q6UWL2-1 747 100% 0 0

Chromosomal Locations for CCDS 6783.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112041492 112041492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112041867 112041960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112052399 112052438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112058428 112058686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112062937 112063033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112078538 112078724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112080074 112080165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112098470 112098662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112102176 112102285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112111654 112111840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112112771 112112868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112124257 112124436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112142320 112142499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112143471 112143623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112149244 112149399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112157500 112157613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112175133 112175235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGGGCCGGGGGCCCTGGGATGCGGGCCCGTCTCGCCGCCTGCTGCCGCTGTTGCTGCTGCTCGGCCTGG
CCCGCGGCGCCGCGGGAGCGCCGGGCCCCGACGGTTTAGACGTCTGTGCCACTTGCCATGAACATGCCAC
ATGCCAGCAAAGAGAAGGGAAGAAGATCTGTATTTGCAACTATGGATTTGTAGGGAACGGGAGGACTCAG
TGTGTTGATAAAAATGAGTGCCAGTTTGGAGCCACTCTTGTCTGTGGGAACCACACATCTTGCCACAACA
CCCCCGGGGGCTTCTATTGCATTTGCCTGGAAGGATATCGAGCCACAAACAACAACAAGACATTCATTCC
CAACGATGGCACCTTTTGTACAGACATAGATGAGTGTGAAGTTTCTGGCCTGTGCAGGCATGGAGGGCGA
TGCGTGAACACTCATGGGAGCTTTGAATGCTACTGTATGGATGGATACTTGCCAAGGAATGGACCTGAAC
CTTTCCACCCGACCACCGATGCCACATCATGCACAGAAATAGACTGTGGTACCCCTCCTGAGGTTCCAGA
TGGCTATATCATAGGAAATTATACGTCTAGTCTGGGCAGCCAGGTTCGTTATGCTTGCAGAGAAGGATTC
TTCAGTGTTCCAGAAGATACAGTTTCAAGCTGCACAGGCCTGGGCACATGGGAGTCCCCAAAATTACATT
GCCAAGAGATCAACTGTGGCAACCCTCCAGAAATGCGGCACGCCATCTTGGTAGGAAATCACAGCTCCAG
GCTGGGCGGTGTGGCTCGCTATGTCTGTCAAGAGGGCTTTGAGAGCCCTGGAGGAAAGATCACTTCTGTT
TGCACAGAGAAAGGCACCTGGAGAGAAAGTACTTTAACATGCACAGAAATTCTGACAAAGATTAATGATG
TATCACTGTTTAATGATACCTGTGTGAGATGGCAAATAAACTCAAGAAGAATAAACCCCAAGATCTCATA
TGTGATATCCATAAAAGGACAACGGTTGGACCCTATGGAATCAGTTCGTGAGGAGACAGTCAACTTGACC
ACAGACAGCAGGACCCCAGAAGTGTGCCTAGCCCTGTACCCAGGCACCAACTACACCGTGAACATCTCCA
CAGCACCTCCCAGGCGCTCGATGCCAGCCGTCATCGGTTTCCAGACAGCTGAAGTTGATCTCTTAGAAGA
TGATGGAAGTTTCAATATTTCAATATTTAATGAAACTTGTTTGAAATTGAACAGGCGTTCTAGGAAAGTT
GGATCAGAACACATGTACCAATTTACCGTTCTGGGTCAGAGGTGGTATCTGGCTAACTTTTCTCATGCAA
CATCGTTTAACTTCACAACGAGGGAACAAGTGCCTGTAGTGTGTTTGGATCTGTACCCTACGACTGATTA
TACGGTGAATGTGACCCTGCTGAGATCTCCTAAGCGGCACTCAGTGCAAATAACAATAGCAACTCCCCCA
GCAGTAAAACAGACCATCAGTAACATTTCAGGATTTAATGAAACCTGCTTGAGATGGAGAAGCATCAAGA
CAGCTGATATGGAGGAGATGTATTTATTCCACATTTGGGGCCAGAGATGGTATCAGAAGGAATTTGCCCA
GGAAATGACCTTTAATATCAGTAGCAGCAGCCGAGATCCCGAGGTGTGCTTGGACCTACGTCCGGGTACC
AACTACAATGTCAGTCTCCGGGCTCTGTCTTCGGAACTTCCTGTGGTCATCTCCCTGACAACCCAGATAA
CAGAGCCTCCCCTCCCGGAAGTAGAATTTTTTACGGTGCACAGAGGACCTCTACCACGCCTCAGACTGAG
GAAAGCCAAGGAGAAAAATGGACCAATCAGTTCATATCAGGTGTTAGTGCTTCCCCTGGCCCTCCAAAGC
ACATTTTCTTGTGATTCTGAAGGCGCTTCCTCCTTCTTTAGCAACGCCTCTGATGCTGATGGATACGTGG
CTGCAGAACTACTGGCCAAAGATGTTCCAGATGATGCCATGGAGATACCTATAGGAGACAGGCTGTACTA
TGGGGAATATTATAATGCACCCTTGAAAAGAGGGAGTGATTACTGCATTATATTACGAATCACAAGTGAA
TGGAATAAGGTGAGAAGACACTCCTGTGCAGTTTGGGCTCAGGTGAAAGATTCGTCACTCATGCTGCTGC
AGATGGCGGGTGTTGGACTGGGTTCCCTGGCTGTTGTGATCATTCTCACATTCCTCTCCTTCTCAGCGGT
GTGA

Translation (747 aa):
MGRGPWDAGPSRRLLPLLLLLGLARGAAGAPGPDGLDVCATCHEHATCQQREGKKICICNYGFVGNGRTQ
CVDKNECQFGATLVCGNHTSCHNTPGGFYCICLEGYRATNNNKTFIPNDGTFCTDIDECEVSGLCRHGGR
CVNTHGSFECYCMDGYLPRNGPEPFHPTTDATSCTEIDCGTPPEVPDGYIIGNYTSSLGSQVRYACREGF
FSVPEDTVSSCTGLGTWESPKLHCQEINCGNPPEMRHAILVGNHSSRLGGVARYVCQEGFESPGGKITSV
CTEKGTWRESTLTCTEILTKINDVSLFNDTCVRWQINSRRINPKISYVISIKGQRLDPMESVREETVNLT
TDSRTPEVCLALYPGTNYTVNISTAPPRRSMPAVIGFQTAEVDLLEDDGSFNISIFNETCLKLNRRSRKV
GSEHMYQFTVLGQRWYLANFSHATSFNFTTREQVPVVCLDLYPTTDYTVNVTLLRSPKRHSVQITIATPP
AVKQTISNISGFNETCLRWRSIKTADMEEMYLFHIWGQRWYQKEFAQEMTFNISSSSRDPEVCLDLRPGT
NYNVSLRALSSELPVVISLTTQITEPPLPEVEFFTVHRGPLPRLRLRKAKEKNGPISSYQVLVLPLALQS
TFSCDSEGASSFFSNASDADGYVAAELLAKDVPDDAMEIPIGDRLYYGEYYNAPLKRGSDYCIILRITSE
WNKVRRHSCAVWAQVKDSSLMLLQMAGVGLGSLAVVIILTFLSFSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH