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Report for CCDS5457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5457.1 Public Homo sapiens 7 VPS41 24 110 108 CCDS HistoryNCBI Gene:27072Re-query CCDS DB by CCDS ID:5457.1Re-query CCDS DB by GeneID:27072See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5457.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310301.9 ENSP00000309457.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310301.9Link to Ensembl Protein Viewer:ENSP00000309457.4Re-query CCDS DB by Nucleotide ID:ENST00000310301Re-query CCDS DB by Protein ID:ENSP00000309457
Original member Current member NCBI NM_014396.4 NP_055211.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014396.4Link to Protein Sequence:NP_055211.2Re-query CCDS DB by Nucleotide ID:NM_014396Re-query CCDS DB by Protein ID:NP_055211Link to BLAST:NP_055211.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055211.2 854 P49754-1 854 100% 0 0

Chromosomal Locations for CCDS 5457.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 38726246 38726326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38726909 38726988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38728542 38728586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38728692 38728791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38741985 38742121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38743402 38743542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38745559 38745613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38752176 38752313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38754702 38754752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38754895 38754936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38756838 38756982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38758354 38758481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38763455 38763547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38765580 38765661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38767537 38767598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38771198 38771254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38772522 38772637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38774115 38774244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38776679 38776776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38789801 38789867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38795465 38795611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38796745 38796864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38817817 38817882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38821203 38821265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38830254 38830328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38862545 38862622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38869146 38869253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38898091 38898129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38909154 38909174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2565 nt):
ATGGCGGAAGCAGAGGAGCAGGAAACTGGGTCCCTTGAAGAATCTACAGATGAGTCTGAGGAAGAAGAGA
GCGAAGAGGAACCCAAGCTGAAGTATGAAAGGCTTTCCAATGGGGTAACTGAAATACTTCAGAAGGATGC
AGCTAGCTGCATGACAGTCCATGACAAGTTTTTGGCATTGGGCACACATTATGGCAAGGTTTATTTACTT
GATGTCCAGGGGAACATCACTCAGAAGTTTGATGTAAGTCCTGTGAAGATAAATCAGATTAGCTTGGATG
AAAGTGGAGAGCACATGGGTGTGTGTTCAGAGGATGGCAAGGTGCAGGTATTTGGACTGTATTCTGGAGA
AGAATTTCACGAGACTTTTGACTGTCCCATTAAAATTATTGCTGTGCACCCACATTTCGTGAGATCCAGT
TGCAAGCAGTTTGTGACCGGAGGGAAGAAGCTGCTACTGTTTGAACGGTCTTGGATGAACAGATGGAAGT
CTGCTGTTCTGCATGAAGGGGAAGGGAACATAAGGAGTGTGAAGTGGAGAGGCCATCTGATTGCTTGGGC
CAATAATATGGGTGTGAAGATTTTTGACATCATCTCAAAGCAAAGAATCACCAATGTGCCCCGGGATGAT
ATAAGTCTTCGCCCAGACATGTATCCCTGCAGCCTCTGCTGGAAGGACAATGTGACACTGATTATTGGCT
GGGGGACTTCTGTCAAGGTGTGCTCAGTGAAGGAACGGCATGCCAGTGAAATGAGGGATTTGCCAAGTCG
ATATGTTGAAATAGTGTCTCAGTTTGAAACTGAATTCTACATCAGTGGACTTGCACCTCTCTGTGATCAG
CTTGTTGTACTTTCGTATGTAAAGGAGATTTCAGAAAAAACGGAAAGAGAATACTGTGCCAGGCCTAGAC
TGGACATCATCCAGCCACTTTCTGAGACTTGTGAAGAGATCTCTTCTGATGCTTTGACAGTCAGAGGCTT
TCAGGAGAATGAATGTAGAGATTATCATTTAGAATACTCTGAAGGGGAATCACTTTTTTACATCGTGAGT
CCGAGAGATGTTGTAGTGGCCAAGGAACGAGACCAAGATGATCACATTGACTGGCTCCTTGAAAAGAAGA
AATATGAAGAAGCATTGATGGCAGCTGAAATTAGCCAAAAAAATATTAAAAGACATAAGATTCTGGATAT
TGGCTTGGCATATATAAATCACCTGGTGGAGAGAGGAGACTATGACATAGCAGCACGCAAATGCCAGAAA
ATTCTTGGGAAAAATGCAGCACTCTGGGAATATGAAGTTTATAAATTTAAAGAAATTGGACAGCTTAAGG
CTATTAGTCCTTATTTGCCAAGAGGTGATCCAGTTCTGAAACCACTCATCTATGAAATGATCTTACATGA
ATTTTTGGAGAGTGATTATGAGGGTTTTGCCACATTGATCCGAGAATGGCCTGGAGATCTGTATAATAAT
TCAGTCATAGTTCAAGCAGTTCGGGATCATTTGAAGAAAGATAGTCAGAACAAGACTTTACTTAAAACCC
TGGCAGAATTGTACACCTATGACAAGAACTATGGCAATGCTCTGGAAATATACTTAACATTAAGACATAA
AGACGTTTTTCAGTTGATCCACAAGCATAATCTTTTCAGTTCTATCAAGGATAAAATTGTTTTATTAATG
GATTTTGATTCAGAGAAAGCTGTTGACATGCTTTTGGACAATGAAGATAAAATTTCAATTAAAAAGGTAG
TGGAAGAATTGGAAGACAGACCAGAGCTACAGCATGTGTATTTGCATAAGCTTTTCAAGAGAGACCACCA
TAAGGGGCAGCGTTACCATGAAAAACAGATCAGTCTTTATGCTGAATATGATCGACCAAACTTACTTCCC
TTTCTCCGAGACAGTACCCATTGCCCACTTGAAAAGGCTCTTGAGATCTGTCAACAGAGAAACTTTGTAG
AAGAGACAGTTTATCTTCTGAGCCGAATGGGTAATAGCCGAAGTGCCCTGAAGATGATTATGGAGGAATT
ACATGATGTTGATAAAGCAATCGAATTTGCCAAGGAGCAAGATGATGGAGAGCTGTGGGAAGATTTGATT
TTATATTCCATTGACAAACCACCATTTATTACTGGCTTGTTAAACAACATTGGCACACATGTTGACCCAA
TTCTACTGATTCACCGTATTAAGGAAGGAATGGAGATCCCCAATTTGAGAGATTCCTTGGTTAAAATTCT
GCAAGACTACAATTTGCAAATTCTGCTTCGTGAAGGCTGCAAGAAGATTCTCGTAGCTGACTCTTTGTCC
TTACTGAAGAAAATGCACCGAACTCAAATGAAAGGTGTTCTTGTTGATGAGGAGAACATCTGTGAGTCGT
GCCTTTCCCCTATTCTTCCATCAGATGCAGCTAAGCCCTTCAGCGTGGTGGTCTTCCATTGCCGGCACAT
GTTCCACAAGGAGTGCCTGCCCATGCCCAGCATGAACTCTGCTGCACAGTTCTGCAACATCTGCAGTGCT
AAGAACCGTGGACCAGGAAGTGCAATTTTGGAGATGAAAAAATAG

Translation (854 aa):
MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLL
DVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSS
CKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWRGHLIAWANNMGVKIFDIISKQRITNVPRDD
ISLRPDMYPCSLCWKDNVTLIIGWGTSVKVCSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQ
LVVLSYVKEISEKTEREYCARPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVS
PRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNN
SVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLM
DFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLP
FLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLI
LYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLS
LLKKMHRTQMKGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
KNRGPGSAILEMKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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