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Report for CCDS53813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53813.1 Public Homo sapiens 12 TBC1D30 24 110 108 CCDS HistoryNCBI Gene:23329Re-query CCDS DB by CCDS ID:53813.1Re-query CCDS DB by GeneID:23329See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53813.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539867.6 ENSP00000440207.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539867.6Link to Ensembl Protein Viewer:ENSP00000440207.1Re-query CCDS DB by Nucleotide ID:ENST00000539867Re-query CCDS DB by Protein ID:ENSP00000440207
Original member Current member NCBI NM_015279.2 NP_056094.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015279.2Link to Protein Sequence:NP_056094.1Re-query CCDS DB by Nucleotide ID:NM_015279Re-query CCDS DB by Protein ID:NP_056094Link to BLAST:NP_056094.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056094.1 761 Q9Y2I9-2 761 100% 0 0

Chromosomal Locations for CCDS 53813.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 64824880 64825033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64827835 64827896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64828444 64828509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64830377 64830502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64832119 64832304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64836490 64836658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64838683 64838851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64843380 64843485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64864668 64864780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64866764 64866903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64870602 64870808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64875001 64875788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGCGGCAGGACAAGCTGACCGGGTCTCTGAGGCGCGGGGGGAGATGCCTGAAGCGGCAGGGCGGCGGCG
TGGGCACCATCCTGAGCAATGTGCTCAAGAAGCGCAGCTGCATTTCCCGGACCGCGCCCCGGCTGCTGTG
CACCCTGGAGCCGGGAGTTGATACCAAGTTGAAATTCACTCTTGAGCCATCTTTAGGTCAAAATGGTTTT
CAGCAGTGGTACGATGCTCTCAAGGCAGTTGCCAGGCTATCCACAGGAATACCAAAGGAATGGAGGAGAA
AGGTTTGGTTGACCTTGGCAGATCATTATTTGCACAGTATAGCCATTGACTGGGACAAAACCATGCGCTT
CACTTTCAATGAAAGGAGTAATCCTGATGATGACTCCATGGGAATTCAGATAGTCAAGGACCTTCACCGC
ACAGGCTGTAGTTCTTACTGTGGCCAGGAGGCTGAGCAGGACAGGGTTGTGTTGAAGCGGGTGCTGCTGG
CCTATGCCCGATGGAACAAAACTGTTGGGTACTGCCAAGGCTTTAACATCCTGGCTGCACTAATTCTGGA
AGTGATGGAAGGCAATGAAGGGGATGCCCTGAAAATTATGATTTACCTTATTGATAAGGTACTTCCCGAA
AGCTATTTCGTCAATAATCTCCGGGCATTGTCTGTGGATATGGCTGTCTTCAGAGACCTTTTAAGAATGA
AGCTGCCGGAATTATCTCAGCACCTGGATACTCTTCAGAGAACTGCAAACAAAGAAAGTGGAGGTGGATA
TGAGCCCCCACTTACAAATGTCTTCACGATGCAGTGGTTTCTGACTCTCTTTGCCACATGCCTCCCTAAT
CAGACCGTTTTAAAGATCTGGGATTCAGTCTTCTTTGAAGGTTCAGAAATCATCCTAAGGGTGTCGCTGG
CTATCTGGGCAAAATTAGGAGAGCAGATAGAATGTTGTGAAACAGCAGATGAATTCTACAGCACCATGGG
GCGCCTTACCCAGGAGATGCTAGAGAATGATCTTCTGCAAAGCCATGAACTCATGCAGACTGTTTATTCC
ATGGCTCCGTTCCCTTTCCCACAATTGGCAGAGTTGAGGGAAAAATACACCTACAACATTACACCGTTCC
CAGCCACAGTTAAACCCACCTCAGTTTCTGGACGACATAGTAAGGCCAGAGACAGTGATGAAGAGAATGA
CCCAGACGATGAGGATGCTGTCGTTAATGCAGTGGGGTGTCTTGGACCTTTTAGTGGGTTCCTGGCTCCT
GAACTGCAGAAGTACCAAAAACAAATTAAAGAGCCAAATGAGGAGCAGAGTCTGAGATCTAATAACATTG
CAGAGCTGAGTCCAGGAGCAATCAATTCCTGTCGAAGTGAATACCATGCAGCTTTTAACAGTATGATGAT
GGAACGCATGACCACAGATATCAATGCACTGAAGCGGCAGTACTCTCGAATTAAAAAGAAGCAACAGCAG
CAGGTTCATCAGGTGTACATCAGGGCAGACAAAGGGCCAGTGACCAGCATTCTCCCGTCTCAGGTAAACA
GTTCTCCAGTTATAAACCACCTTCTTTTAGGAAAGAAGATGAAAATGACTAACAGAGCTGCCAAGAATGC
TGTCATCCACATCCCTGGTCACACAGGAGGGAAAATATCTCCTGTCCCCTACGAAGACCTTAAGACGAAG
CTCAACTCCCCGTGGCGAACTCACATCCGAGTCCACAAAAAGAACATGCCAAGGACCAAGAGTCATCCGG
GCTGTGGGGACACCGTAGGGCTGATAGATGAGCAGAACGAGGCCAGCAAGACCAATGGGCTGGGGGCAGC
AGAGGCATTCCCCTCTGGTTGTACAGCGACAGCTGGGAGAGAAGGCAGCAGCCCTGAAGGCAGTACCAGG
AGGACGATCGAGGGGCAGTCTCCGGAGCCGGTGTTCGGAGATGCTGATGTGGATGTGTCTGCAGTTCAGG
CGAAGTTGGGAGCCCTGGAACTGAACCAGAGGGATGCTGCAGCTGAAACTGAGCTCAGGGTGCACCCACC
CTGCCAGCGGCACTGCCCAGAGCCGCCGAGTGCACCCGAAGAAAACAAAGCCACCAGCAAAGCTCCCCAA
GGCAGCAACTCAAAAACCCCCATCTTTAGCCCTTTTCCCAGCGTCAAGCCCCTGCGGAAATCTGCTACTG
CCAGGAACTTGGGATTATATGGCCCTACAGAAAGAACCCCAACTGTGCACTTTCCTCAAATGAGTAGGAG
CTTCAGCAAACCCGGCGGTGGAAACAGTGGCACTAAAAAACGATGA

Translation (761 aa):
MRQDKLTGSLRRGGRCLKRQGGGVGTILSNVLKKRSCISRTAPRLLCTLEPGVDTKLKFTLEPSLGQNGF
QQWYDALKAVARLSTGIPKEWRRKVWLTLADHYLHSIAIDWDKTMRFTFNERSNPDDDSMGIQIVKDLHR
TGCSSYCGQEAEQDRVVLKRVLLAYARWNKTVGYCQGFNILAALILEVMEGNEGDALKIMIYLIDKVLPE
SYFVNNLRALSVDMAVFRDLLRMKLPELSQHLDTLQRTANKESGGGYEPPLTNVFTMQWFLTLFATCLPN
QTVLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETADEFYSTMGRLTQEMLENDLLQSHELMQTVYS
MAPFPFPQLAELREKYTYNITPFPATVKPTSVSGRHSKARDSDEENDPDDEDAVVNAVGCLGPFSGFLAP
ELQKYQKQIKEPNEEQSLRSNNIAELSPGAINSCRSEYHAAFNSMMMERMTTDINALKRQYSRIKKKQQQ
QVHQVYIRADKGPVTSILPSQVNSSPVINHLLLGKKMKMTNRAAKNAVIHIPGHTGGKISPVPYEDLKTK
LNSPWRTHIRVHKKNMPRTKSHPGCGDTVGLIDEQNEASKTNGLGAAEAFPSGCTATAGREGSSPEGSTR
RTIEGQSPEPVFGDADVDVSAVQAKLGALELNQRDAAAETELRVHPPCQRHCPEPPSAPEENKATSKAPQ
GSNSKTPIFSPFPSVKPLRKSATARNLGLYGPTERTPTVHFPQMSRSFSKPGGGNSGTKKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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