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Report for CCDS51769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51769.1 Public Mus musculus 6 Fam221a 23 108 98 CCDS HistoryNCBI Gene:231946Re-query CCDS DB by CCDS ID:51769.1Re-query CCDS DB by GeneID:231946See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121903.1 ENSMUSP00000113242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121903.1Link to Ensembl Protein Viewer:ENSMUSP00000113242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121903Re-query CCDS DB by Protein ID:ENSMUSP00000113242
Original member Current member NCBI NM_001172216.1 NP_001165687.1 Accepted alive Link to Nucleotide Sequence:NM_001172216.1Link to Protein Sequence:NP_001165687.1Re-query CCDS DB by Nucleotide ID:NM_001172216Re-query CCDS DB by Protein ID:NP_001165687Link to BLAST:NP_001165687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165687.1 258 Q8C790-2 258 100% 0 0

Chromosomal Locations for CCDS 51769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49367909 49367973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49372568 49372741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49376104 49376294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49378396 49378602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49382963 49383079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49388817 49388839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGAGCGGCTGACGTTGCCTCCTGGTGGTGCGGAGGCAGTGGACGAGTACTTGGAGTACCGGAGAATTG
TTGGTGAGGATGATGGAGGGAAACTTTTTACTCCTGAAGAATATGAAGAATACAAGAAAAAAGTTTTACC
CATGCGTTTACAGAACAGATTATTTGTGAGTTGGCGGTCACCAACAGGAATGGATTGCAAACTTGTTGGC
CCGGAGACATTGTGTTTTTGTACCCATAGGTATAAACAGCACAAAACTGACTTTGAAACGATCCCACAGC
AGCGTCCCATTGCCCTGCCGTGCCGAGTGAGTGGTTGCCGGTGCAAGGCTTACCACTATGTCCCTCTGAA
TGGTACCCAGCCTATTCGCTGCAGGTGCAAGCACTTTGCTGATCAGCACAGTGCCGCTCTTGGCTTCACA
TGCAATGCCTGCTCCAAGTGCTCGGGCTTCCACAGCTGCTACACTTGTGCCTGTGGCCAGCCGGCATATG
CCCACGACACAGTGGTGGAAACACGGCAAGAAAGGCTGGCTCAGGGAAAACCGGTAGGACGGGATGTTCC
TTATGCGGCAATGGGAGGTTTAACTGGTTTCAGCTCCCTGGCAGAAGGCTACATGCGCTTAGATGACAGT
GGCATCGGTGCACCCTCGGTTGAAGTTTTGGACTCTGCGGTTTCGGCCATGGACCATCCGTTCCTAAGAG
CCATGCACGCACCATCTACTTCTTCTCCACAGCCACTAGCAGGCGGTAATGAAGATAAAGCTGGAAAAGG
CTGCTAA

Translation (258 aa):
MERLTLPPGGAEAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKKKVLPMRLQNRLFVSWRSPTGMDCKLVG
PETLCFCTHRYKQHKTDFETIPQQRPIALPCRVSGCRCKAYHYVPLNGTQPIRCRCKHFADQHSAALGFT
CNACSKCSGFHSCYTCACGQPAYAHDTVVETRQERLAQGKPVGRDVPYAAMGGLTGFSSLAEGYMRLDDS
GIGAPSVEVLDSAVSAMDHPFLRAMHAPSTSSPQPLAGGNEDKAGKGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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