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Report for CCDS45756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45756.1 Public Homo sapiens 17 SMARCD2 24 110 108 CCDS HistoryNCBI Gene:6603Re-query CCDS DB by CCDS ID:45756.1Re-query CCDS DB by GeneID:6603See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448276.7 ENSP00000392617.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448276.7Link to Ensembl Protein Viewer:ENSP00000392617.2Re-query CCDS DB by Nucleotide ID:ENST00000448276Re-query CCDS DB by Protein ID:ENSP00000392617
Original member Current member NCBI NM_001098426.2 NP_001091896.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098426.2Link to Protein Sequence:NP_001091896.1Re-query CCDS DB by Nucleotide ID:NM_001098426Re-query CCDS DB by Protein ID:NP_001091896Link to BLAST:NP_001091896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091896.1 531 Q92925-1 531 100% 0 0

Chromosomal Locations for CCDS 45756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63832938 63832991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63833069 63833170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63833298 63833420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63833587 63833722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63833909 63834006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63834167 63834328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63834474 63834575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63834705 63834800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63835412 63835567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63836922 63837044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63837195 63837237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63837441 63837625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63842459 63842674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGTCGGGCCGAGGCGCGGGCGGGTTCCCGCTGCCCCCGCTAAGCCCTGGCGGCGGCGCCGTGGCTGCGG
CCCTGGGAGCGCCGCCTCCCCCCGCGGGACCCGGCATGCTGCCCGGACCGGCGCTCCGGGGACCGGGTCC
GGCAGGAGGCGTGGGGGGCCCCGGGGCCGCCGCCTTCCGCCCCATGGGCCCCGCGGGCCCCGCGGCGCAG
TACCAGCGACCTGGCATGTCACCAGGGAACCGGATGCCCATGGCTGGCTTGCAGGTGGGACCCCCTGCTG
GCTCCCCATTTGGTGCAGCAGCTCCGCTTCGACCTGGCATGCCACCCACCATGATGGATCCATTCCGAAA
ACGCCTGCTTGTGCCCCAGGCGCAGCCTCCCATGCCTGCCCAGCGCCGGGGGTTAAAGAGGAGGAAGATG
GCAGATAAGGTTCTACCTCAGCGAATCCGGGAGCTTGTTCCAGAGTCTCAGGCGTACATGGATCTCTTGG
CTTTTGAGCGGAAGCTGGACCAGACCATTGCTCGCAAGCGGATGGAGATCCAGGAGGCCATCAAAAAGCC
TCTGACACAAAAGCGAAAGCTTCGGATCTACATTTCCAATACGTTCAGTCCCAGCAAGGCGGAAGGCGAT
AGTGCAGGAACTGCAGGGACCCCTGGGGGAACCCCAGCAGGGGACAAGGTGGCTTCCTGGGAACTCCGAG
TGGAAGGAAAACTGCTGGATGATCCTAGCAAACAGAAGAGGAAGTTTTCTTCATTCTTTAAGAGCCTCGT
CATTGAGCTGGACAAGGAGCTGTACGGGCCTGACAATCACCTGGTGGAGTGGCACCGGATGCCCACCACC
CAGGAGACAGATGGCTTCCAAGTAAAACGGCCTGGAGACCTCAACGTCAAGTGCACCCTCCTGCTCATGC
TGGATCATCAGCCTCCCCAGTACAAATTGGACCCCCGATTGGCAAGGCTGCTGGGAGTGCACACGCAGAC
GAGGGCCGCCATCATGCAGGCCCTGTGGCTTTACATCAAGCACAACCAGCTGCAGGATGGGCACGAGCGG
GAGTACATCAACTGCAACCGTTACTTCCGCCAGATCTTCAGTTGTGGCCGACTCCGTTTCTCCGAGATTC
CCATGAAGCTGGCAGGGTTGCTGCAGCATCCAGACCCCATTGTCATCAACCATGTCATTAGTGTCGACCC
TAACGACCAGAAGAAGACAGCCTGTTACGACATCGATGTGGAGGTGGACGACCCACTGAAGGCCCAAATG
AGCAATTTTCTGGCCTCTACCACCAATCAGCAGGAGATCGCCTCCCTTGATGTCAAGATCCATGAGACCA
TTGAGTCCATCAACCAGCTGAAGACCCAGAGAGATTTCATGCTCAGTTTTAGCACCGACCCCCAGGACTT
CATCCAGGAATGGCTCCGTTCCCAGCGCCGAGACCTCAAGATCATCACTGATGTGATTGGAAATCCTGAG
GAGGAGAGACGAGCTGCTTTCTACCACCAGCCCTGGGCCCAGGAAGCAGTAGGCAGGCACATCTTTGCCA
AGGTGCAGCAGCGAAGGCAGGAACTGGAACAGGTGCTGGGAATTCGCCTGACCTAA

Translation (531 aa):
MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQ
YQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKM
ADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGD
SAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTT
QETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHER
EYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPE
EERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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