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Report for CCDS4263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4263.1 Public Homo sapiens 5 PCDHGC5 24 110 108 CCDS HistoryNCBI Gene:56097Re-query CCDS DB by CCDS ID:4263.1Re-query CCDS DB by GeneID:56097See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4263.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252087.3 ENSP00000252087.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252087.3Link to Ensembl Protein Viewer:ENSP00000252087.2Re-query CCDS DB by Nucleotide ID:ENST00000252087Re-query CCDS DB by Protein ID:ENSP00000252087
Original member Current member NCBI NM_018929.3 NP_061752.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018929.3Link to Protein Sequence:NP_061752.1Re-query CCDS DB by Nucleotide ID:NM_018929Re-query CCDS DB by Protein ID:NP_061752Link to BLAST:NP_061752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061752.1 944 Q9Y5F6-1 944 100% 0 0

Chromosomal Locations for CCDS 4263.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141489241 141491700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2835 nt):
ATGGGGCCCAAGACACTCCCACAGCTCGCTGGGAAATGGCAAGTGCTGTGCATGTTGTCCTTGTGCTGCT
GG
GGCTGGGTGTCTGGGCAGCTTCGTTACTCAGTGGTGGAGGAGTCTGAGCCGGGGACGCTGGTGGGGAA
T
GTTGCTCAGGATCTGGGCTTAAAGATGACAGATCTGTTGAGCCGGCGGCTGCAATTGGGCTCTGAGGAG
AAT
GGGCGCTATTTTTCCCTGAGCTTGATGAGTGGTGCCCTGGCAGTGAATCAAAAGATTGACCGAGAAA
GC
CTATGTGGAGCCAGCACCAGCTGCCTGCTGCCAGTGCAGGTGGTGACTGAACACCCCCTGGAGCTAAT
C
CGTGTAGAGGTAGAGATCCTGGATCTCAATGACAACTCTCCTAGCTTTGCCACCCCTGAGCGAGAGATG
CGC
ATCTCAGAATCAGCAGCATCTGGGGCACGATTCCCACTGGACAGTGCCCAGGATCCGGATGTGGGCA
CC
AATACTGTGAGCTTTTACACTCTAAGCCCCAACAGCCACTTCTCTCTGAATGTGAAGACCCTAAAAGA
T
GGGAAGCCATTCCCAGAGCTGGTGCTAGAGCAGCAGCTGGATCGTGAAGCCCAGGCAAGACATCAGCTG
GTG
CTTACTGCTGTGGATGGGGGGACCCCAGCCCGCTCAGGGACCACCCTTATCTCTGTCATCGTGCTGG
AC
ATCAATGATAATGCTCCAACCTTCCAATCCTCAGTTCTACGTGTGGGAATCCCAGAGAATGCACCCAT
T
GGTACTCTGCTGCTCCGCCTCAATGCCACTGATCCAGACGAGGGCACCAACGGCCAACTAGACTATTCT
TTT
GGAGACCACACATCTGAGGCAGTGCGGAACCTCTTTGGCCTAGACCCTAGCAGTGGGGCAATCCATG
TG
TTGGGTCCCATAGACTTTGAGGAGTCACGTTTCTATGAAATTCATGCAAGAGCCCGTGACCAGGGACA
G
CCTGCCATGGAGGGCCACTGTGTGATTCAAGTGGATGTGGGGGATGTCAATGACAATGCCCCAGAGGTG
CTA
TTGGCCTCTTTGGCCAACCCTGTCCTAGAGAGCACACCAGTGGGCACAGTAGTGGGGTTGTTTAATG
TG
CGAGACCGGGACTCAGGTAGAAATGGTGAAGTGAGCCTTGATATCTCTCCGGACCTGCCATTTCAGAT
T
AAGCCTTCTGAGAACCACTACTCGCTGCTAACCAGCCAGCCTTTGGACCGGGAGGCCACATCCCACTAT
ATC
ATCGAGCTGCTGGCCAGCGATGCTGGTTCACCTTCCCTACACAAACATCTCACCATCAGGCTCAACA
TT
TCAGATGTCAATGACAATGCACCCCGCTTCAACCAGCAGCTTTACACTGCTTACATCCTAGAAAACCG
G
CCTCCGGGCTCCCTTCTTTGCACTGTGGCTGCCTCAGATCCAGACACTGGGGATAATGCCCGCCTCACC
TAC
TCCATTGTAGGAAATCAGGTTCAGGGAGCCCCAGCCTCCTCCTTTGTGTATGTCAACCCAGAGGATG
GA
CGGATCTTTGCCCAGCGTACCTTTGACTATGAATTGCTGCAGATGCTGCAGATTGTGGTGGGGGTTCG
A
GACTCCGGCTCTCCCCCATTGCATGCCAACACATCTCTGCATGTGTTTGTCCTAGACGAGAATGATAAT
GCC
CCAGCTGTGCTGCACCCACGGCCAGACTGGGAACACTCAGCCCCCCAGCGTCTCCCTCGCTCTGCTC
CT
CCTGGCTCCTTGGTCACCAAGGTGACAGCCGTGGATGCTGATGCAGGCCACAATGCGTGGCTCTCCTA
C
TCACTGTTGCCACAGTCCACAGCCCCAGGACTGTTCCTCGTGTCTACACACACTGGTGAGGTGCGCACA
GCC
CGGGCCTTACTGGAGGATGACTCTGACACCCAGCAGGTGGTGGTCCTGGTGAGGGACAATGGTGACC
CT
TCACTCTCCTCCACAGCCACAGTGCTGCTGGTTCTGGAGGATGAGGACCCTGAGGAAATGCCCAAATC
C
AGTGACTTCCTCATACACCCTCCTGAGCGTTCAGACCTTACCCTTTACCTCATTGTGGCTCTAGCGACC
GTC
AGTCTCTTATCCCTAGTCACCTTCACCTTTCTGTCAGCGAAGTGCCTTCAGGGAAACGCAGACGGGG
AC
GGGGGTGGAGGGCAGTGCTGCAGGCGCCAGGACTCACCCTCCCCGGACTTCTATAAGCAGTCCAGCCC
C
AACCTGCAGGTGAGCTCGGACGGCACGCTCAAGTACATGGAGGTGACGCTGCGGCCCACAGACTCGCAG
AGC
CACTGCTACAGGACGTGCTTTTCACCGGCCTCGGACGGCAGTGACTTCACTTTTCTAAGACCCCTCA
GC
GTTCAGCAGCCCACAGCTCTGGCGCTGGAGCCTGACGCCATCCGGTCCCGCTCTAATACGCTGCGGGA
G
CGGAGCCAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGC
TCC
CAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGA
TC
TTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATT
G
AGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCA
GGC
AGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCA
AC
AAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA


Translation (944 aa):
MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEE
N
GRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREM
R
ISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQARHQL
V
LTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYS
F
GDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEV
L
LASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY
I
IELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLT
Y
SIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDN
A
PAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGEVRT
A
RALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALAT
V
SLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQ
S
HCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQ
QAPPNTDWRFSQAQRPGTSG
S
QNGDDTGTWPNNQFDTEMLQAMILASAS
EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
G
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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