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Report for CCDS3262.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3262.2 Public Homo sapiens 3 FAM131A 24 110 108 CCDS HistoryNCBI Gene:131408Re-query CCDS DB by CCDS ID:3262.2Re-query CCDS DB by GeneID:131408See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3262.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3262.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383847.7 ENSP00000373360.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383847.7Link to Ensembl Protein Viewer:ENSP00000373360.2Re-query CCDS DB by Nucleotide ID:ENST00000383847Re-query CCDS DB by Protein ID:ENSP00000373360
Original member Current member NCBI NM_144635.5 NP_653236.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144635.5Link to Protein Sequence:NP_653236.3Re-query CCDS DB by Nucleotide ID:NM_144635Re-query CCDS DB by Protein ID:NP_653236Link to BLAST:NP_653236.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653236.3 366 Q6UXB0-3 366 100% 0 0

Chromosomal Locations for CCDS 3262.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184337631 184337718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184338387 184338529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184341724 184341817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184342066 184342248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184342744 184342860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184344495 184344970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGCCTATGATTTCTGTGCTGGGCAAAATGTTTCTGTGGCAGCGTGAAGGGCCTGGAGGACGATGGACTT
GTCAGACAAGTCGCAGAGTGTCCTCGGACCCCGCTTGGGCTGTGGAGTGGATCGAACTTCCTCGGGGTCT
CTCTCTATCCTCTTTGGGATCTGCTCGAACCCTCCGAGGCTGGAGCAGGTCCTCCCGCCCTTCCTCGGTG
GACAGTCAGGACTTGCCAGAGGTGAATGTTGGAGACACAGTCGCGATGCTGCCCAAGTCCCGGCGAGCCC
TAACTATCCAGGAGATCGCTGCGCTGGCCAGGTCCTCCCTGCATGGTATTTCCCAGGTGGTGAAGGACCA
CGTGACCAAGCCTACCGCCATGGCCCAGGGCCGAGTGGCTCACCTCATTGAGTGGAAGGGCTGGAGCAAG
CCGAGTGACTCACCTGCTGCCCTGGAATCAGCCTTTTCCTCCTATTCAGACCTCAGCGAGGGCGAACAAG
AGGCTCGCTTTGCAGCAGGAGTGGCTGAGCAGTTTGCCATCGCGGAAGCCAAGCTCCGAGCATGGTCTTC
GGTGGATGGCGAGGACTCCACTGATGACTCCTATGATGAGGACTTTGCTGGGGGAATGGACACAGACATG
GCTGGGCAGCTGCCCCTGGGGCCGCACCTCCAGGACCTGTTCACCGGCCACCGGTTCTCCCGGCCTGTGC
GCCAGGGCTCCGTGGAGCCTGAGAGCGACTGCTCACAGACCGTGTCCCCAGACACCCTGTGCTCTAGTCT
GTGCAGCCTGGAGGATGGGTTGTTGGGCTCCCCGGCCCGGCTGGCCTCCCAGCTGCTGGGCGATGAGCTG
CTTCTCGCCAAACTGCCCCCCAGCCGGGAAAGTGCCTTCCGCAGCCTGGGCCCACTGGAGGCCCAGGACT
CACTCTACAACTCGCCCCTCACAGAGTCCTGCCTTTCCCCCGCGGAGGAGGAGCCAGCCCCCTGCAAGGA
CTGCCAGCCACTCTGCCCACCACTAACGGGCAGCTGGGAACGGCAGCGGCAAGCCTCTGACCTGGCCTCT
TCTGGGGTGGTGTCCTTAGATGAGGATGAGGCAGAGCCAGAGGAACAGTGA

Translation (366 aa):
MPMISVLGKMFLWQREGPGGRWTCQTSRRVSSDPAWAVEWIELPRGLSLSSLGSARTLRGWSRSSRPSSV
DSQDLPEVNVGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSK
PSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGEDSTDDSYDEDFAGGMDTDM
AGQLPLGPHLQDLFTGHRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARLASQLLGDEL
LLAKLPPSRESAFRSLGPLEAQDSLYNSPLTESCLSPAEEEPAPCKDCQPLCPPLTGSWERQRQASDLAS
SGVVSLDEDEAEPEEQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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