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Report for CCDS29101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29101.1 Public Mus musculus 18 2700062C07Rik 23 108 98 CCDS HistoryNCBI Gene:68046Re-query CCDS DB by CCDS ID:29101.1Re-query CCDS DB by GeneID:68046See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097646.4 ENSMUSP00000095251.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097646.4Link to Ensembl Protein Viewer:ENSMUSP00000095251.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097646Re-query CCDS DB by Protein ID:ENSMUSP00000095251
Original member Current member NCBI NM_026529.4 NP_080805.1 Accepted alive Link to Nucleotide Sequence:NM_026529.4Link to Protein Sequence:NP_080805.1Re-query CCDS DB by Nucleotide ID:NM_026529Re-query CCDS DB by Protein ID:NP_080805Link to BLAST:NP_080805.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080805.1 217 Q5XFZ0 217 100% 0 0

Chromosomal Locations for CCDS 29101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24470904 24470980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24471062 24471084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24472950 24473149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24475525 24475724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24477269 24477422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGCGGCAGAAGTATTACATTGAAGCGGCTGCTCGGGGCCTGGTGGGAAGCTGCCCGGGCCAGGCTCGGT
ACCTCCTATGGGCCTACAGTTCGACACACGAGGATAACAGCACTTTCCAGGAAACATGTCCACACTGCTT
CCAATTGTTGGTTCTGGATAACTCTAGAGTGCGCCTCAAACCTAAAGCCAAATTGACACCAAAGATACAG
AAACTTCTTAATCGGGAAGCAAGAAATGATACACTCAGTTTTAAAGAAGCAAAACTGTTGAGAAAGTATA
AAGACTCTACAAGTGTGCTGCTGATTACCTGTAGAACATGCAACAGAACAGTGAGACACCATGGTAAGAG
TAGAAGCTTTCTGTGGGCTCTGAAGAGCAACGCCGCCACTGCTGCCAACAAGGCCAGCCCGAAGACGCCA
AAGAGAACGGCTCCAGGCTCTGCAAACCTCGGTCAGAGTACAAATGGTTCCAAAGGCAAGAGTCCCTCCT
TGACCATCAGAACACCTACATCTGGACAGTCAACACCCATTTGCTCCTCAAGGAATGGGAGCAAAAGAAA
AAAACACTTCTCTCAACTAAAAGCACTGCTTAGTCAGAGTGCATCTGACAAGAACCCAAAGCTGGACTTC
AGGCACTTCTTATCTTCTCTATGA

Translation (217 aa):
MRQKYYIEAAARGLVGSCPGQARYLLWAYSSTHEDNSTFQETCPHCFQLLVLDNSRVRLKPKAKLTPKIQ
KLLNREARNDTLSFKEAKLLRKYKDSTSVLLITCRTCNRTVRHHGKSRSFLWALKSNAATAANKASPKTP
KRTAPGSANLGQSTNGSKGKSPSLTIRTPTSGQSTPICSSRNGSKRKKHFSQLKALLSQSASDKNPKLDF
RHFLSSL


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