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Report for CCDS24613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24613.1 Public Mus musculus 11 Or2y14 23 108 98 CCDS HistoryNCBI Gene:258464Re-query CCDS DB by CCDS ID:24613.1Re-query CCDS DB by GeneID:258464See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060434.4 ENSMUSP00000051954.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060434.4Link to Ensembl Protein Viewer:ENSMUSP00000051954.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060434Re-query CCDS DB by Protein ID:ENSMUSP00000051954
Original member Current member EBI ENSMUST00000213776.1 ENSMUSP00000149183.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213776.1Link to Ensembl Protein Viewer:ENSMUSP00000149183.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213776Re-query CCDS DB by Protein ID:ENSMUSP00000149183
Original member Current member NCBI NM_146472.2 NP_666683.1 Accepted alive Link to Nucleotide Sequence:NM_146472.2Link to Protein Sequence:NP_666683.1Re-query CCDS DB by Nucleotide ID:NM_146472Re-query CCDS DB by Protein ID:NP_666683Link to BLAST:NP_666683.1

Chromosomal Locations for CCDS 24613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49513640 49514596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGGAAGTTTCAATCTCAGCTTAGAAGGTTTCCTGTTGGTAGGCTTCTCAGACTGGCCTCAACTGGAAC
TTATCCTCCTGGTCTTCATTTCGATTTTCTACTCTCTTACCCTCTGTGGCAACATCACCATTATTGTTCT
CACTCAACAAGACCTTCATCTGCACACACCCATGTACTTCTTCCTTGCCCACCTCTCCTTCCTGGACCTC
TGCTTCACCAGTAGCACTGTGCCCAAACTTCTAATCAGTCTTTCCCGAGGTGATCAGACTATCAGCTATG
CTGGGTGCATGACCCAGTTCTTCATAGCACTCTTACTGGGTGGAACTGAGTGTGTGCTCCTTGTGGTGAT
GGCTTTCGACCGCTATGTCGCTGTGTGTCGTCCACTACACTACACCAGCATTATGCACCCCCTTCTCTGC
CATGCATTGGCCATCTCCTCCTGGGTGGGAGGCCTTGTGAACTCTCTGACTCAGACAAGTCTCATCATGA
CCATACCTCTCTGTGGCCATCACCTGAACCACTTCTTCTGTGAGATGCTTGTTCTCCTGAAGCTGGCTTG
TGAGGACACAGTGGGAACAGAGACCTACTTGTTTTGGGCTGGAGCTGTAATTTTGGTCTGTCCTGTAGCA
CTAATTCTAGGCACCTATGCACACATTGCTCATGCAGTGTTGAAGATCAAGTCAAGATCTGGGCGCAGAA
AGGCTCTGGGAACTTGTGGGTCCCACCTTACTGTGGTTTTTCTTTTTTATGGCTCAGCCATGTACACGTA
TCTCCAGCCTATCCACACGTATTCTGGTAGTGAAGGGAAGTTTGCTGCCCTCTTTTATACTATCATTACT
CCAATGCTGAACCCTCTGATTTATACCCTAAGAAACAAGGATGTAAAGGGGGCTCTGTGCAAGGTACTTG
TAAAAGGAAAAAAGGAGACTAAGACTAGAAGAAAGATGGTTGAATAA

Translation (318 aa):
MGSFNLSLEGFLLVGFSDWPQLELILLVFISIFYSLTLCGNITIIVLTQQDLHLHTPMYFFLAHLSFLDL
CFTSSTVPKLLISLSRGDQTISYAGCMTQFFIALLLGGTECVLLVVMAFDRYVAVCRPLHYTSIMHPLLC
HALAISSWVGGLVNSLTQTSLIMTIPLCGHHLNHFFCEMLVLLKLACEDTVGTETYLFWAGAVILVCPVA
LILGTYAHIAHAVLKIKSRSGRRKALGTCGSHLTVVFLFYGSAMYTYLQPIHTYSGSEGKFAALFYTIIT
PMLNPLIYTLRNKDVKGALCKVLVKGKKETKTRRKMVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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