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Report for CCDS24232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24232.1 Public Mus musculus 10 Pip4k2c 23 108 98 CCDS HistoryNCBI Gene:117150Re-query CCDS DB by CCDS ID:24232.1Re-query CCDS DB by GeneID:117150See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013970.8 ENSMUSP00000013970.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013970.8Link to Ensembl Protein Viewer:ENSMUSP00000013970.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000013970Re-query CCDS DB by Protein ID:ENSMUSP00000013970
Original member Current member NCBI NM_001359280.1 NP_001346209.1 Accepted alive Link to Nucleotide Sequence:NM_001359280.1Link to Protein Sequence:NP_001346209.1Re-query CCDS DB by Nucleotide ID:NM_001359280Re-query CCDS DB by Protein ID:NP_001346209Link to BLAST:NP_001346209.1
Original member Current member NCBI NM_054097.3 NP_473438.1 Accepted alive Link to Nucleotide Sequence:NM_054097.3Link to Protein Sequence:NP_473438.1Re-query CCDS DB by Nucleotide ID:NM_054097Re-query CCDS DB by Protein ID:NP_473438Link to BLAST:NP_473438.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346209.1 421 Q91XU3 421 100% 0 0
NP_473438.1 421 Q91XU3 421 100% 0 0

Chromosomal Locations for CCDS 24232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127199064 127199144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127199313 127199416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127199589 127199856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127200184 127200297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127200840 127200878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127201039 127201185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127205675 127205818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127206614 127206710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127208870 127208967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127211338 127211511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCGTCCTCCTCCGTCCCTCCCGCCACCGCACCCGCGGCAGCTGGAGGCCCCGGCCCGGGATTCGGCT
TCGCCTCCAAAACCAAGAAGAAGCATTTCGTACAGCAGAAAGTGAAGGTGTTCCGGGCCGCGGACCCGCT
GGTGGGCGTGTTCCTGTGGGGCGTCGCTCACTCGATCAATGAGCTCAGCCAGGTACCGCCCCCAGTGATG
TTGCTGCCAGATGACTTTAAAGCCAGCTCCAAGATCAAGGTCAACAATCACTTTTTCCATAGAGAAAATC
TTCCCAGTCATTTCAAGTTCAAGGAGTATTGTCCCCAGGTCTTCAGGAACCTGAGAGATCGGTTTGCCAT
CGATGATCACGATTACTTGGTGTCCCTTACTCGAAGCCCCCCAAGCGAAACTGAAGGCAGTGATGGCCGT
TTCCTTATCTCCTATGACCGCACTCTGGTCATCAAGGAAGTGTCGAGCGAAGATATTGCGGATATGCACA
GCAACCTCTCCAACTACCACCAGTACATAGTGAAATGTCATGGCAACACGCTTCTGCCCCAGTTCCTGGG
CATGTACCGAGTCAGTGTAGAAAATGAAGACAGCTACATGCTCGTGATGCGCAATATGTTTAGTCATCGT
CTTCCTGTGCATAGGAAGTATGACCTCAAGGGCTCTCTAGTGTCCCGGGAAGCCAGCGATAAGGAAAAGG
TTAAAGAACTGCCAACACTAAAGGATATGGACTTTCTTAACAAGAACCAGAAAGTGTATATTGGTGAAGA
AGAAAAGAAAGTATTCCTGGAGAAGCTGAAGCGAGATGTGGAGTTTCTAGTGCAGCTGAAGATCATGGAC
TACAGCCTCCTGTTGGGCATCCACGACATCATCCGGGGCTCTGAACCCGAGGAAGAGGGGCCTGTGAGGG
AGGAGGAGTCTGAGTGGGATGGGGACTGTAACCTGGCTGGACCTCCCGCCCTGGTGGGCTCCTATGGTAC
CTCCCCTGAGGGTATCGGAGGCTACATCCATTCCCACCGGCCACTGGGCCCAGGAGAGTTTGAGTCCTTC
ATCGATGTCTATGCTATCCGGAGTGCGGAGGGGGCCCCCCAGAAGGAGGTGTATTTCATGGGCCTCATTG
ACATTCTGACACAGTATGATGCCAAGAAGAAAGCAGCTCATGCAGCCAAGACTGTCAAGCACGGGGCGGG
GGCAGAGATCTCCACTGTCCATCCTGAGCAGTATGCTAAGCGATTCCTGGACTTTATTGCCAACATCTTT
GCCTAA

Translation (421 aa):
MASSSVPPATAPAAAGGPGPGFGFASKTKKKHFVQQKVKVFRAADPLVGVFLWGVAHSINELSQVPPPVM
LLPDDFKASSKIKVNNHFFHRENLPSHFKFKEYCPQVFRNLRDRFAIDDHDYLVSLTRSPPSETEGSDGR
FLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVENEDSYMLVMRNMFSHR
LPVHRKYDLKGSLVSREASDKEKVKELPTLKDMDFLNKNQKVYIGEEEKKVFLEKLKRDVEFLVQLKIMD
YSLLLGIHDIIRGSEPEEEGPVREEESEWDGDCNLAGPPALVGSYGTSPEGIGGYIHSHRPLGPGEFESF
IDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTVKHGAGAEISTVHPEQYAKRFLDFIANIF
A


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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