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Report for CCDS22870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22870.1 Public Mus musculus 9 Or7e174 23 108 98 CCDS HistoryNCBI Gene:258552Re-query CCDS DB by CCDS ID:22870.1Re-query CCDS DB by GeneID:258552See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212999.3 ENSMUSP00000148302.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212999.3Link to Ensembl Protein Viewer:ENSMUSP00000148302.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000212999Re-query CCDS DB by Protein ID:ENSMUSP00000148302
Original member Current member EBI ENSMUST00000212767.3 ENSMUSP00000148634.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212767.3Link to Ensembl Protein Viewer:ENSMUSP00000148634.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000212767Re-query CCDS DB by Protein ID:ENSMUSP00000148634
Original member Current member NCBI NM_146559.2 NP_666770.1 Accepted alive Link to Nucleotide Sequence:NM_146559.2Link to Protein Sequence:NP_666770.1Re-query CCDS DB by Nucleotide ID:NM_146559Re-query CCDS DB by Protein ID:NP_666770Link to BLAST:NP_666770.1

Chromosomal Locations for CCDS 22870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20100761 20101690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGATGAAACTAAAAATGGAAAACATAACATATGTTTCACAATTTTATCTTCTGAGAGTATCTGATGATC
CAGAACTGCAGCCCTTTCTCAGTGGGTTGTTCCTTTCCATGTACCTGATATCAGTCCTTGGGAACCTCAT
CATCATCCTGATTGTCAGCTCGTTCTCCCACCTCCACACTCCGATGTATTTCTTCCTCTCCATTCTGTCC
TTGGCTGACATTGGCTTCATTTCTACAACAGTCCCAAACATGATTGCAGAGCTTCAAATCCACAGTCCAG
TCATATCCTACGTGGGCTGCCTCACTCAGATGTCTCTTTTTATCATTTTTGCATGTATGGATAGTATGCT
TCTGGCTGTGATGGCATATGACAGGTTTGTGGCCATCTGTCACCCATTGCGTTATGCAATAATCATGAAT
CCTTGTCGCTGTGGCATCTTAGTTTTAATGTCTTTTTCTGCTAGCCTTTTTGAGTCCCTGCTTCACAATT
TGGTTGCCTTACAACTTAAGTGTTTCAAAGATGTGGCAATTGCCAATTTCTTCTGTCACCCTTCTCAACT
TCTAAATTTAAGTTGCAACAACACATTTAATAATAACATACTCATGTATGTTATTGGTGTCATACTTGGT
GTTTTTCCCTTATCAGGGATCCTTATTTCATACTTTAAAATCATTTCTTCTATTCTGAGAATCACCTCTT
CAAGTGGGAGGTATAAAGCTTTCTCTACCTGTGGGTCTCACCTCGCAGTGGTATGCTTATTTTATGGAAC
AGGGCTTGGAGAGTATTTTGGCTCACTTTTGTCTCATTCTTCTGGAAACAATGTGGTGGCCTCATTAATG
TACACTGTGGTCACCCCCATGCTAAATCCTTTCATCTACAGTCTGAGGAATCAGGACATTAGTGATTCCC
TTAAAAGGCTCCACTTTTGA

Translation (309 aa):
MMKLKMENITYVSQFYLLRVSDDPELQPFLSGLFLSMYLISVLGNLIIILIVSSFSHLHTPMYFFLSILS
LADIGFISTTVPNMIAELQIHSPVISYVGCLTQMSLFIIFACMDSMLLAVMAYDRFVAICHPLRYAIIMN
PCRCGILVLMSFSASLFESLLHNLVALQLKCFKDVAIANFFCHPSQLLNLSCNNTFNNNILMYVIGVILG
VFPLSGILISYFKIISSILRITSSSGRYKAFSTCGSHLAVVCLFYGTGLGEYFGSLLSHSSGNNVVASLM
YTVVTPMLNPFIYSLRNQDISDSLKRLHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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