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Report for CCDS22842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22842.1 Public Mus musculus 9 Chordc1 23 108 98 CCDS HistoryNCBI Gene:66917Re-query CCDS DB by CCDS ID:22842.1Re-query CCDS DB by GeneID:66917See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001825.8 ENSMUSP00000001825.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001825.8Link to Ensembl Protein Viewer:ENSMUSP00000001825.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001825Re-query CCDS DB by Protein ID:ENSMUSP00000001825
Original member Current member NCBI NM_025844.2 NP_080120.1 Accepted alive Link to Nucleotide Sequence:NM_025844.2Link to Protein Sequence:NP_080120.1Re-query CCDS DB by Nucleotide ID:NM_025844Re-query CCDS DB by Protein ID:NP_080120Link to BLAST:NP_080120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080120.1 331 Q9D1P4 331 100% 0 0

Chromosomal Locations for CCDS 22842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 18292397 18292460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18295300 18295349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18301006 18301062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18302026 18302183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18304283 18304386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18305293 18305351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18308750 18308820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18309833 18309938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18311912 18312031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18312430 18312492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18312778 18312921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGCGCTCTTGTGTTACAACCGCGGCTGTGGCCAGCGTTTCGACCCAGAGGCCAACTCGGACGATGCTT
GCACATACCACCCAGGTGTTCCTGTCTTTCATGATGCCCTAAAGGGTTGGTCTTGCTGTAAAAGAAGGAC
AACTGATTTCTCTGACTTCTTAAGCATTGTAGGCTGTACAAAAGGTAGGCATAATAGTGAGAAGCCACCT
GAACCGGTCAAGCCTGAAGTCAAGACTACTGAGAAGAAGGAACTATCTGAATTAAAACCCAAATTTCAGG
AGCACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAAAAGGCCAAGCCCAGATGAGCCAATGACAAA
CTTGGAGTTAAAAATATCTGCTTCCCTAAAACAAGCACTTGATAAACTTAAACTGTCATCTGGGAGTGAA
GAAGATAAAAAAGAAGAAGACAGTGATGAAATTAAGATTGGGACTTCCTGTAAAAATGGAGGGTGTTCAA
AGACATACCAGGGTCTACAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCACGA
GGGGATGAAATATTGGAGCTGTTGTAGAAGAAAAACTTCAGATTTTAATACATTCTTAGCCCAAGAGGGC
TGTACAAGAGGGAAGCATGTATGGACTAAAAAAGATGCAGGGAAAAAAGTTGTTCCGTGTAGACACGACT
GGCATCAGACTGGGGGTGAAGTTACCATCTCAGTGTATGCTAAAAATTCCCTGCCAGAACTCAGTCAAGT
AGAAGCCAACAGTACTTTGTTAAATGTACACATTGTATTTGAAGGAGAGAAAGAATTTCATCAAAATGTG
AAACTGTGGGGTGTAATTGATGTTAAACGAAGTTATGTAACTATGACTGCAACAAAGATTGAGATCACTA
TGAGAAAGGCGGAACCCATGCAGTGGGCAAGTCTTGAACTACCTACAACCAAAAAGCAGGAGAAACAAAA
AGATATAGCTGATTGA

Translation (331 aa):
MALLCYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKPP
EPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLSSGSE
EDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEG
CTRGKHVWTKKDAGKKVVPCRHDWHQTGGEVTISVYAKNSLPELSQVEANSTLLNVHIVFEGEKEFHQNV
KLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPTTKKQEKQKDIAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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