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Report for CCDS21150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21150.1 Public Mus musculus 7 Slc7a9 23 108 98 CCDS HistoryNCBI Gene:30962Re-query CCDS DB by CCDS ID:21150.1Re-query CCDS DB by GeneID:30962See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21150.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032703.9 ENSMUSP00000032703.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032703.9Link to Ensembl Protein Viewer:ENSMUSP00000032703.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032703Re-query CCDS DB by Protein ID:ENSMUSP00000032703
Original member Current member EBI ENSMUST00000118969.7 ENSMUSP00000112726.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118969.7Link to Ensembl Protein Viewer:ENSMUSP00000112726.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118969Re-query CCDS DB by Protein ID:ENSMUSP00000112726
Original member Current member EBI ENSMUST00000118383.7 ENSMUSP00000113181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118383.7Link to Ensembl Protein Viewer:ENSMUSP00000113181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118383Re-query CCDS DB by Protein ID:ENSMUSP00000113181
Original member Current member NCBI NM_001199015.1 NP_001185944.1 Accepted alive Link to Nucleotide Sequence:NM_001199015.1Link to Protein Sequence:NP_001185944.1Re-query CCDS DB by Nucleotide ID:NM_001199015Re-query CCDS DB by Protein ID:NP_001185944Link to BLAST:NP_001185944.1
Original member Current member NCBI NM_001199016.1 NP_001185945.1 Accepted alive Link to Nucleotide Sequence:NM_001199016.1Link to Protein Sequence:NP_001185945.1Re-query CCDS DB by Nucleotide ID:NM_001199016Re-query CCDS DB by Protein ID:NP_001185945Link to BLAST:NP_001185945.1
Original member Current member NCBI NM_021291.3 NP_067266.1 Accepted alive Link to Nucleotide Sequence:NM_021291.3Link to Protein Sequence:NP_067266.1Re-query CCDS DB by Nucleotide ID:NM_021291Re-query CCDS DB by Protein ID:NP_067266Link to BLAST:NP_067266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185944.1 487 Q9QXA6 487 100% 0 0
NP_001185945.1 487 Q9QXA6 487 100% 0 0
NP_067266.1 487 Q9QXA6 487 100% 0 0

Chromosomal Locations for CCDS 21150.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35449800 35449886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35452369 35452516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35453394 35453636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35454054 35454179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35454558 35454657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35455577 35455621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35456114 35456237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35457008 35457111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35459847 35459943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35460775 35460924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35463596 35463770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35465831 35465895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGAGGAGACAAGCCTGAGGAGACGGAGAGAGGATGAGAAATCCACCCACAGTACTGAACTCAAGACCA
CAAGTCTCCAGAAAGAGGTGGGTCTTCTCAGTGGCATCTGTATCATTGTGGGCACCATCATCGGCTCCGG
GATCTTCATCTCCCCCAAGTCTGTGCTGGCCAACACAGAATCCGTGGGGCCCTGTCTCATCATATGGGCC
GCCTGTGGAATCCTGGCTACACTGGGCGCCCTGTGCTTTGCAGAGCTTGGCACAATGATTACCAAGTCAG
GGGGTGAGTACCCCTATCTGATGGAGGCCTTTGGCCCCATCCCTGCCTACCTCTTCTCCTGGACCAGCCT
GATCGTCATGAAGCCCTCATCCTTCGCCATCATCTGCCTCAGCTTTTCAGAGTATGTGTGTGCAGCCTTT
TACTCAGGTTGCAAGCCTCCTGCTGTGGTAGTGAAACTCCTGGCTGCTGCTGCCATCTTGTTTATCACGA
CAGTGAATGCGCTAAGCGTGCGGCTTGGCAGCTATGTCCAGAATGTCTTCACGGCAGCCAAGATGGTGAT
CGTGGCCATCATCATCATCAGCGGACTGGTCTTCCTGGCCCAAGGAAATGTAAAGAACTTTCAGAATTCT
TTTGAGGGTACACAGACCTCTGTGGGTGCCATCAGTCTGGCATTTTACAATGGACTCTGGGCCTACGATG
GTTGGAACCAACTCAACTATATCACTGAAGAGCTTAGAAACCCTTACAGAAACCTGCCCATGGCCATTGT
CATTGGGATTCCTCTGGTGACCGTATGCTACATCCTCATGAATATTGCCTACTTCACAGTGATGACCCCA
ACGGAGCTCTTGCAGTCCCAGGCTGTGGCTGTGACCTTCGGAGACCGCGTTCTCTATCCAGCATCTTGGG
TAGTCCCACTTTTTGTGGCATTTTCAACCATCGGTGCTGCTAATGGTACCTGCTTTACAGCCGGCAGGCT
CATCTATGTGGCAGGCCGGGAAGGCCACATGCTTAAAGTGCTCTCCTACATCAGTGTCAAGCGCCTCACG
CCAGCCCCTGCCCTCATATTTTATGGTATAATAGCCATCATTTACATCATCCCTGGGGACATCAACTCCT
TAGTCAATTATTTCAGTTTTGCTGCATGGCTGTTTTATGGTATGACAATCCTAGGACTCGTTGTGATGCG
ATTCACAAGGAAAGATCTAGAGAGGCCCATCAAGGTGCCCCTCTTCATCCCTATCATTGTGATTCTCGTA
TCTCTTTTCTTGATCCTGGCTCCAATCATCAGTGAGCCGGCCTGGGAGTATCTCTACTGTGTGTTGTTCA
TACTGAGTGGACTTATATTTTACTTCCTTTTTGTCTACTACAAGTTCGGATGGGCCCAGAGAATCTCCAG
GCCGGTCACAAAGCACCTGCAGATGCTCATGGAAGTCGTCCCACCAGAAAAGGACCCAGAGTAA

Translation (487 aa):
MEETSLRRRREDEKSTHSTELKTTSLQKEVGLLSGICIIVGTIIGSGIFISPKSVLANTESVGPCLIIWA
ACGILATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLIVMKPSSFAIICLSFSEYVCAAF
YSGCKPPAVVVKLLAAAAILFITTVNALSVRLGSYVQNVFTAAKMVIVAIIIISGLVFLAQGNVKNFQNS
FEGTQTSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPMAIVIGIPLVTVCYILMNIAYFTVMTP
TELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVKRLT
PAPALIFYGIIAIIYIIPGDINSLVNYFSFAAWLFYGMTILGLVVMRFTRKDLERPIKVPLFIPIIVILV
SLFLILAPIISEPAWEYLYCVLFILSGLIFYFLFVYYKFGWAQRISRPVTKHLQMLMEVVPPEKDPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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