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Report for CCDS20539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20539.1 Public Mus musculus 6 Cops7a 23 108 98 CCDS HistoryNCBI Gene:26894Re-query CCDS DB by CCDS ID:20539.1Re-query CCDS DB by GeneID:26894See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032220.14 ENSMUSP00000032220.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032220.14Link to Ensembl Protein Viewer:ENSMUSP00000032220.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032220Re-query CCDS DB by Protein ID:ENSMUSP00000032220
Original member NCBI NM_001355541.1 NP_001342470.1 Updated not alive Link to Nucleotide Sequence:NM_001355541.1Link to Protein Sequence:NP_001342470.1Re-query CCDS DB by Nucleotide ID:NM_001355541Re-query CCDS DB by Protein ID:NP_001342470
Current member NCBI NM_001355541.2 NP_001342470.1 Accepted alive Link to Nucleotide Sequence:NM_001355541.2Link to Protein Sequence:NP_001342470.1Re-query CCDS DB by Nucleotide ID:NM_001355541Re-query CCDS DB by Protein ID:NP_001342470Link to BLAST:NP_001342470.1
Original member NCBI NM_001355542.1 NP_001342471.1 Updated not alive Link to Nucleotide Sequence:NM_001355542.1Link to Protein Sequence:NP_001342471.1Re-query CCDS DB by Nucleotide ID:NM_001355542Re-query CCDS DB by Protein ID:NP_001342471
Current member NCBI NM_001355542.2 NP_001342471.1 Accepted alive Link to Nucleotide Sequence:NM_001355542.2Link to Protein Sequence:NP_001342471.1Re-query CCDS DB by Nucleotide ID:NM_001355542Re-query CCDS DB by Protein ID:NP_001342471Link to BLAST:NP_001342471.1
Original member NCBI NM_012003.3 NP_036133.1 Updated not alive Link to Nucleotide Sequence:NM_012003.3Link to Protein Sequence:NP_036133.1Re-query CCDS DB by Nucleotide ID:NM_012003Re-query CCDS DB by Protein ID:NP_036133
Current member NCBI NM_012003.4 NP_036133.1 Accepted alive Link to Nucleotide Sequence:NM_012003.4Link to Protein Sequence:NP_036133.1Re-query CCDS DB by Nucleotide ID:NM_012003Re-query CCDS DB by Protein ID:NP_036133Link to BLAST:NP_036133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342470.1 275 Q9CZ04-1 275 100% 0 0
NP_001342471.1 275 Q9CZ04-1 275 100% 0 0
NP_036133.1 275 Q9CZ04-1 275 100% 0 0

Chromosomal Locations for CCDS 20539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124959598 124959637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124959799 124959950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124960091 124960196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124961158 124961360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124962358 124962446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124962622 124962697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124964724 124964885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGAGTGCGGAGGTGAAGGTGACAGGGCAGAACCAAGAGCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGG
GGGCGGCACTGGCCACACTCATCCACCAGGTGCTGGAGGCCCCTGGTGTCTACGTGTTTGGGGAACTGCT
GGATATGCCTAATGTTAGAGAGCTGGCAGAAAGCGACTTTGCCTCCACCTTCCGGCTGCTCACAGTGTTT
GCCTATGGGACCTATGCGGACTACTTAGCTGAAGCCAGGAATCTCCCCCCACTGACTGACGCACAGAAGA
ATAAGCTTCGACATCTGTCAGTTGTCACTCTGGCTGCCAAAGTCAAGTGTATCCCATATGCAGTGTTGCT
GGAGGCCCTTGCCCTTCGAAACGTGCGCCAGCTGGAAGACCTTGTGATCGAGGCTGTGTATGCTGATGTC
CTTCGTGGCTCTCTGGACCAGCGCAATCAGCGGCTAGAGGTTGATTACAGCATCGGGCGGGACATCCAGC
GCCAGGACCTCAGTGCCATCGCCCAGACCCTGCAAGAGTGGTGCGTGGGCTGTGAGGTTGTGTTGTCGGG
CATCGAAGAGCAGGTCAGCCGTGCCAACCAGCACAAGGAGCAGCAGCTGGGCCTGAAGCAGCAGATCGAA
AGTGAGGTTGCCAACCTTAAGAAAACCATTAAAGTTACGACAGCAGCTGCTGCTGCAGCCACCTCCCAGG
ATCCTGAGCAACACCTGACAGAGCTGAGAGAACCAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAA
AGCCTCCAAGGGCAAGGGACTCCGAGGGAGCGCCAAGATTTGGTCCAAGTCGAACTGA

Translation (275 aa):
MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF
AYGTYADYLAEARNLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADV
LRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIE
SEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPASGTNQRQPSKKASKGKGLRGSAKIWSKSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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