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Report for CCDS18572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18572.1 Public Mus musculus 4 Svbp 23 108 98 CCDS HistoryNCBI Gene:69216Re-query CCDS DB by CCDS ID:18572.1Re-query CCDS DB by GeneID:69216See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097908.3 ENSMUSP00000095518.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097908.3Link to Ensembl Protein Viewer:ENSMUSP00000095518.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097908Re-query CCDS DB by Protein ID:ENSMUSP00000095518
Original member Current member NCBI NM_001038998.2 NP_001034087.1 Accepted alive Link to Nucleotide Sequence:NM_001038998.2Link to Protein Sequence:NP_001034087.1Re-query CCDS DB by Nucleotide ID:NM_001038998Re-query CCDS DB by Protein ID:NP_001034087Link to BLAST:NP_001034087.1

Chromosomal Locations for CCDS 18572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119195704 119195775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119195872 119196021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119200897 119200983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGACTACTGTCCCATTGTGCAGGAAACTGAGACTCAGAAGTGAGGAGACTCGACTAGGAACGCACAGCA
AGGTCAGAGCTAACCAAGAAGCATTCAGAAGCCAAACCATGGATCCACCTGCCCGGAAAGAAAAATCCAA
AGTTAAAGAACCAGCCTTCAGAGTGGAGAAGGCTAAGCAGAAATCTGCCCAGCAGGAGCTGAAGCAAAGA
CAGAGAGCAGAGATCTATGCTCTCAACAGAGTCATGACGGAGCTGGAGCAGCAGCAGTTTGATGAGTTCT
GTAAGCAGATGCAGCCGCCTGGGGAGTGA

Translation (102 aa):
MTTVPLCRKLRLRSEETRLGTHSKVRANQEAFRSQTMDPPARKEKSKVKEPAFRVEKAKQKSAQQELKQR
QRAEIYALNRVMTELEQQQFDEFCKQMQPPGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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