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Report for CCDS15000.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15000.2 Public Mus musculus 1 Mdh1b 23 108 98 CCDS HistoryNCBI Gene:76668Re-query CCDS DB by CCDS ID:15000.2Re-query CCDS DB by GeneID:76668See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15000.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15000.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114094.2 ENSMUSP00000109728.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114094.2Link to Ensembl Protein Viewer:ENSMUSP00000109728.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114094Re-query CCDS DB by Protein ID:ENSMUSP00000109728
Original member Current member NCBI NM_029696.4 NP_083972.3 Accepted alive Link to Nucleotide Sequence:NM_029696.4Link to Protein Sequence:NP_083972.3Re-query CCDS DB by Nucleotide ID:NM_029696Re-query CCDS DB by Protein ID:NP_083972Link to BLAST:NP_083972.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083972.3 500 Q5F204 500 100% 0 0

Chromosomal Locations for CCDS 15000.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 63699009 63699037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63701576 63701641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63711115 63711166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63711452 63711591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63715192 63715355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63718519 63718660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63719522 63720018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63721488 63721630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63721808 63721942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63725608 63725720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63730271 63730292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCCAAATTTGTGATCGCGGGTAAAGCAAACTGCCCATATTATGCTAAGGCAGAACTTCTGGCAGACT
ATTTACAAAAGAATCTTCCTGACTTTCGGATTTTTAAGATCACGCAACATCCTGACAAGTGGGAGGATTG
GGTGGAAGATGTTTGTGAAAGGAATATGTGGGACCACAGAACCTCCCCCATTATCTGGAGAGAGTTGCTG
GATCGTGGAGGCAGGGGCTTGCTTTTGGGAGGATACAATGAGTTTCTGGAACATGCCCAGCTTTACTATG
GTGTCACTTCCAACATGACGACGGAGTTGATGATGGTCATCGCTAAAGAGAACATGCAGACGCATACAGA
ACAACAGTTGGATAAAGAAACCATGAAAGATCTCATCAGCCCTTTGCAGGTCTGGATTGCCAGTGCAGGT
ACTTACGTGTGCTGCCACTTAATTCCCCTCTTGCTAAGCGGGGAAGTGTTTGGGATGCACACAGAGATCA
GCCTGACCCTGTTTGACCAGGAGCAAAGGGAGGACTGCCTCAGAAGCATAGTGATGGAAACCCAGGACTT
GGCCTCACCAGTGCTCCGCACTGTGTCCTTCTGCACCACGGTAAAGGAGGCCTTCCTTCAGGCCCAGGTC
ATCATCATCCTGGATGACAGTACAGAGGAAGAGGTGTACAGCCTGGAGAGCTGCCTCCGGAGCAGGGTGC
CGCTGTGCCGCCTCTACGGCTACCTGATAGAGAAAAACGCTCACAAGTCTGTCAAGGTCATCGTGGGAGG
GAAAAACTTTGTAAATCTGAAAACAACTTTGCTCATGCAATATGCCCCTAACATCGCGAGCAACATTATC
GCAGTGGCTCTGGGGGTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGATGAAAACCACTTCAGCCA
ACATCAAAGATGTGATAATCTGGGGCAATATCACTGGAAATAACTACGTTGATCTGAGGAAAGCAAAAGT
TTACAACTATGAGAGTGCTGTCAAGGGGCCTCCTGGACACTATCACTCTGTGTTAAGCTTGATTTTTGAC
AGAGAGTGGATCACAAAAGAATTTGTGCAGACACTTAAAATCTTGAGCAGCACTGGAAAACAATTTGGAG
GCATCTTGGCTGCACACAGCATAGCCACCACCCTGAAGTACTGGTATCATGGCTCACCACCTGGAGAGAT
TGTTTCCTTGGGGGTAATGAGTGAAGGCCAGTTTGACATTCCTGAAGGGATCGTCTTTTCTATGCCAGTG
AAATTTGAGAATGGAACGTGGGTGGTTCTTACTGATCTTGAAGACATTTCGCTTAGTGAGAAGACACTAA
GCAGGCTCACAGGCGATCTGATTCAGGAGAAACTTGTTGCATGTGGAGACTTATTAACTTTTCAGCCAAT
TGAAGAAGATCCCAAAGATAACGAACCTTCTAATACAGGCATGAATGAAGAAAAGGAACAGCCTGGGTCC
GATGACTCTGATGAAAAAAATGAGGACCAATAA

Translation (500 aa):
MAKFVIAGKANCPYYAKAELLADYLQKNLPDFRIFKITQHPDKWEDWVEDVCERNMWDHRTSPIIWRELL
DRGGRGLLLGGYNEFLEHAQLYYGVTSNMTTELMMVIAKENMQTHTEQQLDKETMKDLISPLQVWIASAG
TYVCCHLIPLLLSGEVFGMHTEISLTLFDQEQREDCLRSIVMETQDLASPVLRTVSFCTTVKEAFLQAQV
IIILDDSTEEEVYSLESCLRSRVPLCRLYGYLIEKNAHKSVKVIVGGKNFVNLKTTLLMQYAPNIASNII
AVALGVEGQAKAVLARKMKTTSANIKDVIIWGNITGNNYVDLRKAKVYNYESAVKGPPGHYHSVLSLIFD
REWITKEFVQTLKILSSTGKQFGGILAAHSIATTLKYWYHGSPPGEIVSLGVMSEGQFDIPEGIVFSMPV
KFENGTWVVLTDLEDISLSEKTLSRLTGDLIQEKLVACGDLLTFQPIEEDPKDNEPSNTGMNEEKEQPGS
DDSDEKNEDQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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