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Report for CCDS14391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14391.1 Public Homo sapiens X EFNB1 24 110 108 CCDS HistoryNCBI Gene:1947Re-query CCDS DB by CCDS ID:14391.1Re-query CCDS DB by GeneID:1947See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000204961.5 ENSP00000204961.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000204961.5Link to Ensembl Protein Viewer:ENSP00000204961.4Re-query CCDS DB by Nucleotide ID:ENST00000204961Re-query CCDS DB by Protein ID:ENSP00000204961
Original member Current member NCBI NM_004429.5 NP_004420.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004429.5Link to Protein Sequence:NP_004420.1Re-query CCDS DB by Nucleotide ID:NM_004429Re-query CCDS DB by Protein ID:NP_004420Link to BLAST:NP_004420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004420.1 346 P98172 346 100% 0 0

Chromosomal Locations for CCDS 14391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 68829777 68829904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68838617 68838894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68839664 68839756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68839960 68840088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68840242 68840654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCTCGGCCTGGGCAGCGTTGGCTCGGCAAGTGGCTTGTGGCGATGGTCGTGTGGGCGCTGTGCCGGC
TCGCCACACCGCTGGCCAAGAACCTGGAGCCCGTATCCTGGAGCTCCCTCAACCCCAAGTTCCTGAGTGG
GAAGGGCTTGGTGATCTATCCGAAAATTGGAGACAAGCTGGACATCATCTGCCCCCGAGCAGAAGCAGGG
CGGCCCTATGAGTACTACAAGCTGTACCTGGTGCGGCCTGAGCAGGCAGCTGCCTGTAGCACAGTTCTCG
ACCCCAACGTGTTGGTCACCTGCAATAGGCCAGAGCAGGAAATACGCTTTACCATCAAGTTCCAGGAGTT
CAGCCCCAACTACATGGGCCTGGAGTTCAAGAAGCACCATGATTACTACATTACCTCAACATCCAATGGA
AGCCTGGAGGGGCTGGAAAACCGGGAGGGCGGTGTGTGCCGCACACGCACCATGAAGATCATCATGAAGG
TTGGGCAAGATCCCAATGCTGTGACGCCTGAGCAGCTGACTACCAGCAGGCCCAGCAAGGAGGCAGACAA
CACTGTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCTGGGTGACTCTGATGGCAAGCATGAG
ACTGTGAACCAGGAAGAGAAGAGTGGCCCAGGTGCAAGTGGGGGCAGCAGCGGGGACCCTGATGGCTTCT
TCAACTCCAAGGTGGCATTGTTCGCGGCTGTCGGTGCCGGTTGCGTCATCTTCCTGCTCATCATCATCTT
CCTGACGGTCCTACTACTGAAGCTACGCAAGCGGCACCGCAAGCACACACAGCAGCGGGCGGCTGCCCTC
TCGCTCAGTACCCTGGCCAGTCCCAAGGGGGGCAGTGGCACAGCGGGCACCGAGCCCAGCGACATCATCA
TTCCCTTACGGACTACAGAGAACAACTACTGCCCCCACTATGAGAAGGTGAGTGGGGACTACGGGCACCC
TGTCTACATCGTCCAAGAGATGCCGCCCCAGAGCCCGGCGAACATCTACTACAAGGTCTGA

Translation (346 aa):
MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEAG
RPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPNYMGLEFKKHHDYYITSTSNG
SLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHE
TVNQEEKSGPGASGGSSGDPDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAAL
SLSTLASPKGGSGTAGTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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