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Report for CCDS87085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87085.1 Public Homo sapiens 3 PCBP4 24 110 108 CCDS HistoryNCBI Gene:57060Re-query CCDS DB by CCDS ID:87085.1Re-query CCDS DB by GeneID:57060See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000471622.5 ENSP00000418925.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471622.5Link to Ensembl Protein Viewer:ENSP00000418925.1Re-query CCDS DB by Nucleotide ID:ENST00000471622Re-query CCDS DB by Protein ID:ENSP00000418925
Original member Current member NCBI NM_001363885.1 NP_001350814.1 Accepted alive Link to Nucleotide Sequence:NM_001363885.1Link to Protein Sequence:NP_001350814.1Re-query CCDS DB by Nucleotide ID:NM_001363885Re-query CCDS DB by Protein ID:NP_001350814Link to BLAST:NP_001350814.1

Chromosomal Locations for CCDS 87085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51958104 51958152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51958790 51958959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959047 51959099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959229 51959292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959367 51959411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959577 51959651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51959895 51960023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51960189 51960320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51960526 51960642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51960866 51960898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51961010 51961033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51961160 51961240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGAGCGGCTCGGACGGGGGACTGGAGGAGGAGCCAGAGCTCAGCATCACCCTCACGCTGCGGATGCTGA
TGCACGGGAAGGAAGTGGGCAGCATCATCGGGAAGAAGGGCGAGACTGTAAAGCGAATCCGGGAGCAGAG
CAGTGCCCGGATCACCATCTCCGAGGGCTCCTGCCCTGAACGCATCACCACCATCACCGGGTCTACAGCA
GCTGTCTTCCATGCAGTCTCCATGATTGCTTTCAAACTGGATGAGGACCTTTGTGCTGCTCCTGCAAATG
GTGGAAATGTCTCCAGGCCTCCAGTGACCCTGCGCCTTGTCATCCCTGCCAGTCAGTGTGGCTCACTGAT
TGGGAAGGCTGGCACCAAGATCAAGGAGATCCGAGAGACTACGGGTGCCCAGGTACAGGTGGCAGGGGAC
CTGCTCCCCAACTCCACAGAGCGAGCTGTTACGGTATCTGGGGTGCCTGATGCCATCATCCTGTGTGTGC
GCCAGATCTGCGCTGTTATCCTGGAGTCCCCACCCAAAGGAGCCACTATCCCCTACCATCCGAGCCTCTC
CCTAGGTACTGTTCTTCTCTCTGCCAACCAGGGCTTCTCTGTCCAGGGTCAGTATGGGGCTGTGACCCCA
GCTGAGGTCACCAAGCTCCAGCAGCTCTCAAGCCATGCGGTCCCCTTTGCCACACCCAGCGTGGTGCCAG
GACTGGATCCCGGCACACAGACCAGCTCACAGGAGTTCTTGGTTCCCAACGATTTGATTGGCTGTGTGAT
CGGGCGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCAGGGGCACATATCAAGATCGGGAACCAA
GCAGAGGGCGCTGGGGAGCGGCATGTCACCATCACTGGCTCTCCGGTCTCCATCGCCCTGGCCCAGTACC
TCATCACTGCCTGGGCCGCCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCAGCTAA

Translation (323 aa):
MSGSDGGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA
AVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD
LLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP
AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ
AEGAGERHVTITGSPVSIALAQYLITAWAAAGLGGLHCQDGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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