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Report for CCDS85848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85848.1 Public Mus musculus Y Gm20826 23 108 98 CCDS HistoryNCBI Gene:100040160Re-query CCDS DB by CCDS ID:85848.1Re-query CCDS DB by GeneID:100040160See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179256.1 ENSMUSP00000137147.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179256.1Link to Ensembl Protein Viewer:ENSMUSP00000137147.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179256Re-query CCDS DB by Protein ID:ENSMUSP00000137147
Original member Current member EBI ENSMUST00000185348.1 ENSMUSP00000140488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185348.1Link to Ensembl Protein Viewer:ENSMUSP00000140488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185348Re-query CCDS DB by Protein ID:ENSMUSP00000140488
Original member Current member NCBI NM_001101623.1 NP_001095093.1 Accepted alive Link to Nucleotide Sequence:NM_001101623.1Link to Protein Sequence:NP_001095093.1Re-query CCDS DB by Nucleotide ID:NM_001101623Re-query CCDS DB by Protein ID:NP_001095093Link to BLAST:NP_001095093.1

Chromosomal Locations for CCDS 85848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 7636290 7636973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGACATCACTCAAGAAGAAGAATAGGGGGAAGCCTTCTTCCCAGGCACTGGGGAATATTGTTGGCTGCA
GAATTTCTCACGGGTGGAAGGAAGGTAATGAGCCTGTCACCCATTGGAAGGCCATCATTCTAGGTCAACT
GCAAACAAACCCTTCTCTTTATTTGGTGAAGTATGACGGAATTGACAGTGTCTACGGACAGGAGCTCCAC
AGCGATGAGAGGATTTTAAATCTTAAGGTCTTGCCTCACAATGTAGTTTTTCCTCAGGTGAGGGATGTCC
AACTCTCCAGCGCCCTGGTTGGCAGAGAGGTACAACACAAATTTGAGGGGAAAGATGGCTCTGAGGACAA
CTGGAGTGGGATGGTGCTATCCCAGGTGCCATTCTTACAGGACTATTTTTACATTTCCTACAAGAAGGAT
CTGGTCCTCTACGTCTATCAGCTCCTGGATGACTACAAGGAAGGTAACCTCCACATCATTCCAGAGACCC
CTCTGGCTAAGGCGAGATCAGGTGATGACAATGACTTCTTAATAGGTTCCTGGGTGCAGTACACCAGAGA
TGATGGATCCAAAAAGTTTGGAAAGGTTGTTTACAAAGCTCTAGCCAATCCTACTGTGTACTTTATCAAA
TTTCTTGGTGACCTACATATCTATGTCTATACTCTGGTGTCAAATATCACTTAA

Translation (227 aa):
MTSLKKKNRGKPSSQALGNIVGCRISHGWKEGNEPVTHWKAIILGQLQTNPSLYLVKYDGIDSVYGQELH
SDERILNLKVLPHNVVFPQVRDVQLSSALVGREVQHKFEGKDGSEDNWSGMVLSQVPFLQDYFYISYKKD
LVLYVYQLLDDYKEGNLHIIPETPLAKARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKALANPTVYFIK
FLGDLHIYVYTLVSNIT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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