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Report for CCDS84225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84225.1 Public Mus musculus 16 Lrch3 23 108 98 CCDS HistoryNCBI Gene:70144Re-query CCDS DB by CCDS ID:84225.1Re-query CCDS DB by GeneID:70144See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84225.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135193.8 ENSMUSP00000130708.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135193.8Link to Ensembl Protein Viewer:ENSMUSP00000130708.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135193Re-query CCDS DB by Protein ID:ENSMUSP00000130708
Original member Current member NCBI NM_001310674.1 NP_001297603.1 Accepted alive Link to Nucleotide Sequence:NM_001310674.1Link to Protein Sequence:NP_001297603.1Re-query CCDS DB by Nucleotide ID:NM_001310674Re-query CCDS DB by Protein ID:NP_001297603Link to BLAST:NP_001297603.1

Chromosomal Locations for CCDS 84225.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32914142 32914403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32950292 32950436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32952057 32952183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32955300 32955405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32959395 32959531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32961635 32961744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32973880 32973973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32975729 32975849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32979396 32979544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32981828 32981904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32985976 32986027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32986739 32986888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32988431 32988481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32990265 32990318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32993762 32993833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32994948 32994996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32995806 32995913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32997382 32997488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32998504 32998641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33005664 33005741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33009189 33009392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGGCGGCCGCGGGCTTGGTGGCTGTGGTAGCGGCTGCGGAGTACTCTGGCCCTGTGGCGTCCGGGGGAA
ACCTCTCCGGTGCGACCTGTGGGCCGAGCCCTGGGTTGGGCCCTGGTCCTGGCCCGGGCTCTTGGAGCCG
CTCGGTCGACCGAGCCCTGGAAGAGGCGGCGGTCACCGGGGTGCTGAGCCTGAGCGGCCGGAAACTGAGG
GAGTTTCCCCGGGGAGCGGCCAACCATGACCTGACGGACACCACCCGGGCCGACCTGTCACGAAATCGCC
TCTCAGAAATCCCTATGGAAGCATGTCACTTTGTTTCCCTGGAAAGTCTTAACCTATACCAGAATTGTAT
TCGGTATATCCCAGAGGCTGTTCTAAACTTACAAGCTCTGACATTCCTAAATATTAGTCGGAATCAACTG
TCAACATTGCCAGTCCACTTGTGTAACTTACCACTGAAAGTCTTAATCGCTAGCAATAACAAATTGGTCT
CGCTTCCTGAAGAAATTGGACATCTCAGACATTTGACAGAACTTGATGTAAGCTGCAATGAAATTCAAAC
TGTGCCTTCCCAAATTGGTAATCTGGAAGCCTTGAGAGACTTCAATGTAAGAAGAAATCATCTTCTACGC
TTGCCTGAAGAGCTGGCAGAGGTGCCTTTGATACGGCTCGACTTCTCGTGCAATAAAATCACAGTGATCC
CTGTTTGTTACCGGAACCTCCGGCACCTCCAGGTGATCACCTTGGACAACAACCCGCTTCAGTCGCCTCC
TGCACAGATATGTATAAAAGGCAAAATCCACATATTTAAATACCTGAACATACAAGCTTGTAAGATTGCT
CCAGATCTGCCAGATTATGAACGGAGGCCCTTGGGATTTGGATCCTGCCATGAAGAACTGTACTCAGGCC
GTCCTTACGGAGCCCTGGATTCAGGCTTCAATAGTGTGGATAGTGGTGATAAGAGATGGTCAGGGAATGA
GCCTACAGATGAATTTTCGGATCTGCCTCTTCGAGTGGCAGAGATTACCAAAGAGCAAAGACTGCGGAGA
GAAAGCCAGTACCAGGAGAATCGCAGCAGTGTGGCGGTCACAAATGGTGGAGTGGAGCATGATCTGGATC
AGATTGACTACATTGACAGCTGTACTACAGAAGAAGAAGAAAACGACGTGAAACAACCCAAAAGCCTGGA
CACGAACAGTCTCAGCTCACAGTTTATGGCATATATTGAACAACGGAGAATCTCACATGAGGTTTCACCA
GTAAAGCCAATAGCCGTTAGAGAGTTTCAAAAAACAGAAGACATGAAAAGATACTCACATCAAAACAGGG
TTCCAGTTGAGCCATCTTTGGTGTTATCAATGCCACCAAGTCACAATCAGCTTTCACATTCAGACTTGGA
GCTTCATCAGAGGAGAGAGCAGTCTATTGAGTGCACTCGGAGAGAGGCACAGCTTGCTGCCCTGCAGTAC
GAGGAGGAGAAAATAAGGACCAAGCAGATTCAGAGAGATGCTGTCCTAGACTTTGTCAAACAGAAAGCAT
CACACAACCCACAGAGACAGCAGCCCCCTGGGAATGGCGAGTGTTCCTTCCCATCCAGAAGGTCCCAGCA
CACTGATGACAGTGCCTTGCTAGTGTCACTGTCAGGGTTGGATGGAGTGAGCTGCGTGGCTACCCGGCCT
CATTCTTCTGCCTTCACACCTCTCAAGAGCGAAAACAGAGTTGATGTCACCTCAAGCTTTCCTATGACAG
AGACAGTCCATCATTCCCCTGCGTATTCCTTTCCTGCTGCTACCCAGAGAAATCAGCCCCAGCGCCCTGA
AAGCTTCCTTTTCCGAGCTGCTGTCAGGGCAGAAGCTAATAAAGGTCGTGCATCCCCGCTTCTCCTGTCA
TCTGCACCTGCAACTGATCCTACAGATGCTATAACAAGACAGAGAGAAGAAGAGCTGAAATTAATAGATC
AGCTACGAAAACACATTGAGTACCGGTTGAAAGTCTCTTTGCCCTGTGACCTTGGAGCAGCTCTAACTGA
CGGTGTTGTACTTTGCCACTTGGCCAATCATGTTCGGCCTCGATCTGTCCCAAGCATTCATGTCCCATCC
CCAGCCGTGCCTAAATTAACGATGGCAAAGTGCAGGCGGAATGTGGAGAACTTCCTGGATGCTTGCAGAA
AAATCGGTGTACCCCAGGACAATCTCTGTTCTCCTTCCGACATCCTTCAGCTAAACCTCAGCCTTAAGAG
AACTGTTGAAACGCTGCTCTCTCTTGGGGCACGTGCGGAAGAATCCAGCTTTGTCTCTCTGTCTGTCCAG
CTTCTGGGTTTTGTGGCATTTTACTGTTCTTTAATGTTAATTCTCTGTGTGCTTTATTACCGGGTCTTCA
CCTACAGCTGA

Translation (796 aa):
MAAAGLVAVVAAAEYSGPVASGGNLSGATCGPSPGLGPGPGPGSWSRSVDRALEEAAVTGVLSLSGRKLR
EFPRGAANHDLTDTTRADLSRNRLSEIPMEACHFVSLESLNLYQNCIRYIPEAVLNLQALTFLNISRNQL
STLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTVPSQIGNLEALRDFNVRRNHLLR
LPEELAEVPLIRLDFSCNKITVIPVCYRNLRHLQVITLDNNPLQSPPAQICIKGKIHIFKYLNIQACKIA
PDLPDYERRPLGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRR
ESQYQENRSSVAVTNGGVEHDLDQIDYIDSCTTEEEENDVKQPKSLDTNSLSSQFMAYIEQRRISHEVSP
VKPIAVREFQKTEDMKRYSHQNRVPVEPSLVLSMPPSHNQLSHSDLELHQRREQSIECTRREAQLAALQY
EEEKIRTKQIQRDAVLDFVKQKASHNPQRQQPPGNGECSFPSRRSQHTDDSALLVSLSGLDGVSCVATRP
HSSAFTPLKSENRVDVTSSFPMTETVHHSPAYSFPAATQRNQPQRPESFLFRAAVRAEANKGRASPLLLS
SAPATDPTDAITRQREEELKLIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPS
PAVPKLTMAKCRRNVENFLDACRKIGVPQDNLCSPSDILQLNLSLKRTVETLLSLGARAEESSFVSLSVQ
LLGFVAFYCSLMLILCVLYYRVFTYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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