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Report for CCDS81053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81053.1 Public Mus musculus 9 Xrn1 23 108 98 CCDS HistoryNCBI Gene:24127Re-query CCDS DB by CCDS ID:81053.1Re-query CCDS DB by GeneID:24127See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000185633.6 ENSMUSP00000140278.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185633.6Link to Ensembl Protein Viewer:ENSMUSP00000140278.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185633Re-query CCDS DB by Protein ID:ENSMUSP00000140278
Original member Current member NCBI NM_001311130.1 NP_001298059.1 Accepted alive Link to Nucleotide Sequence:NM_001311130.1Link to Protein Sequence:NP_001298059.1Re-query CCDS DB by Nucleotide ID:NM_001311130Re-query CCDS DB by Protein ID:NP_001298059Link to BLAST:NP_001298059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298059.1 1719 P97789-1 1719 99.8837% 0 2

Chromosomal Locations for CCDS 81053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95954869 95954943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95963971 95964203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95967712 95967809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95969233 95969342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95969447 95969557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95970729 95970811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95973279 95973366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95973450 95973618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95974396 95974463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95974762 95974899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95977530 95977596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95977797 95977902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95979135 95979224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95981775 95981931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95985184 95985303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95988837 95989006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95990976 95991096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95991189 95991287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95995100 95995203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95998216 95998347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95999414 95999576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96002135 96002248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96003844 96003942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96005997 96006112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96006701 96006847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96011211 96011300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96011524 96011659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96017751 96017807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96018047 96018179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96021806 96021875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96024022 96024220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96026838 96026933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96033585 96033693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96035635 96035696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96038619 96038729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96038879 96039001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96039700 96039844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96045486 96045661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96047783 96047896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96048341 96048443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96051594 96051754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96052513 96052809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5160 nt):
ATGGGAGTCCCCAAGTTTTACCGATGGATCTCGGAGCGGTACCCCTGCCTCAGCGAAGTGGTGAAGGAGC
ATCAGATTCCAGAATTTGATAACTTGTACCTGGATATGAATGGGATTATACATCAGTGTTCCCATCCTAA
TGATGATGATGTTCACTTCAGAATTTCAGATGACAAAATCTTTACTGACATTTTTCACTACTTGGAGGTG
TTGTTTCGAATTATTAAACCTAGGAAAGTGTTCTTTATGGCTGTTGACGGTGTGGCTCCTCGAGCAAAAA
TGAACCAGCAACGCGGGAGGCGTTTTAGGTCAGCCAAGGAGGCAGAAGACAAAATTAAAAAAGCAATAGA
AAAGGGAGAAACACTTCCTACAGAAGCCAGATTCGATTCCAACTGTATTACGCCAGGGACTGAATTCATG
GCCAGATTGCATGAACATCTGAAGTATTTTGTAAATATGAAAATTTCCACAGACAAATCATGGCAAGGTG
TTACCATCTACTTCTCAGGCCATGAGACTCCTGGAGAAGGAGAGCATAAAATCATGGAATTTATCAGATC
CGAGAAAGCAAAGCCAGATCATGATCCAAACACCAGACATTGTCTTTATGGCTTAGATGCTGACTTGATC
ATGCTTGGATTAACAAGTCACGAGGCACATTTTTCTCTCTTAAGAGAAGAAGTTCGGTTTGGTGGAAAAA
AAACACAAAGGGTATGTGCACCAGAAGAAACGACATTTCACCTCCTACACTTGTCTTTAATGAGAGAGTA
TATTGATTATGAATTTTCAGCATTAAAGGAAAAGATCACATTTAAATATGATATTGAAAAAATTATAGAT
GATTGGATTTTGATGGGATTTCTTGTTGGCAATGATTTTATCCCTCATCTACCTCATTTACATATTAATC
ATGATGCGCTGCCTCTTCTTTATGGAACATATATTGCTATCCTGCCAGAACTTGGAGGTTATATTAATGA
AAGTGGACATCTCAACTTACCTCGATTTGAGAGATACCTTGTGAAACTATCAGATTTTGATCGAGAACAC
TTCAGTGAAGTTTTTGTGGACCTCAAGTGGTTTGAAAGCAAAGTTGGTAACAAGTATCTCAATGAGGCAG
CAGGTGCAGCAGCAGAAGAGGCAAAGAACTGCAAGGAGAAGAGAAAACCGAAGGGTCAGGAAAATTCTTT
AAGTTGGGCTGCATTAGACAAAAGTGAAGGTGAAGGAGTAGCTTCTAGAGATAATTTTGAGGATGAGACT
GAAGATGATGATCTGTTTGAAACTGAATTTAGACAATATAAGAGAACATACTACATGACGAAGATGGGCG
TCGATGTAGTATCTGATGAGTTTCTGGCTAATCAGGCTGCCTGTTATGTTCAGGCTATACAGTGGATCTT
ACACTATTACTATCATGGAGTCCAGTCCTGGAGCTGGTACTATCCCTATCATTACGCACCCTTCCTATCT
GATATCCGCAGTATCAGTACACTCAAAATCCATTTTGAACTCGGAAAACCCTTCAAGCCATTCGAGCAGC
TGCTTGCTGTACTTCCATCGGCTAGTAAAAATTTGCTTCCTACATGCTACCAGCATTTGATGACCAGTGA
AGACTCGCCAATTATAGAATATTATCCACCTGATTTCAAAACTGATCTAAATGGGAAACAACAGGAATGG
GAAGCTGTGGTATTAATACCGTTTATTGATGAGACGCGATTATTGGAAGCCATGGAGACATGTAACCACT
CCCTCAAAAAAGAAGAGAGGAAAAGAAACCAGCACAGTGAGTGCCTGATGTGCTGGTATGACAGAGACAC
AGAGTTCACCTACTCCTCTCCATGGCCAGAAAAGTTCCCTGCCATAGAACGATGTTGTACAAGGTATAAA
ATGATATCATTAGATGCTTGGCGCGTAGACATAAACAAGAACAAAATAACCAGGGTTGACCAGAAGGCAT
TATATTTCTGTGGATTCCCTACTTTGAAACACATCAAACATAAATTTTTTTTGAAGAAAAGTGGTGTTCA
AGTATTCCAGCAGAGTAGTCGTGGTGAAAACTTGATGTTGGAAATTTCAGTAAATGCAGAACCAGATGAA
CTTAGGATAGAGAACATAGCTTCGGCGGTGCTGGGAAAGGCAGTCTTTGTTAACTGGCCTCATCTTGAAG
AAGCTAGAGTTGTGGCAGTATCAGATGGTGAAACTAAGTTTTACATAGAAGAACCTCCAGGAACACAGAA
GGTTTATTTGGGAAAAACTGCCCCACCATCTAAAGTCATCCAACTTACAGATAAAGAACAATCGAACTGG
ACTAAAGAAATACAAGGAATTTCAGAACAATATCTAAGAAGAAAGGGAATAATAATAAATGAAACATCTG
CTGTTGTGTATGCTCAGTTGCTCACGGGTCGTAAATATCAAATCAGTCAGAATGGTGAAGTTCGTCTAGA
AAAACAGTGGTCAAAACAAATTCTTCCTTTTGTTTATCAAACTATTGTTAAGGACATCCGAGCTTTTGAC
TCTCGTTTCTCCAATATCAAGACATTGGATGACTTGTTTCCACCGAGAACTATGGTCTTTATGCTTGGAA
CTCCTTATTATGGCTGCACTGGAGAAGTTCAGGATTCAGGAGACTTGATTACAGAAGGGAGAATTCGTGT
GGTTTTCAGCATTCCATGTGAGCCAAATCTTGATGCTTTAATACAGAATCAGCATAAATACTCTATAAAG
TACAACCCAGGATATGTGTTGGCCGGTCGCCTTGGCGTGAGTGGATACCTTGTTTCAAGGTTTACAGGAA
GTATTTTTATTGGAAGAGGATCTAGGAGAAACCCTCATGGAGACCATAAAGCAAATGTGGGTTTAAATCT
CAAATTCAACAAGAAAAATGAGGAAGTCCCTGGCTATACAAAGAAAGTGGGGAACGAGTGGATGTACTCG
TCGGCAGCAGAGCAGCTCCTCGCAGAGTACATAGAGAGAGCACCAGAACTGTTCAGTTATATAGCAAAAA
ACAGCCAAGAAGATGTATTCTATGAAGATGACATCTGGCCTGGAGAAAATGAGAACGGGGCTGAGAAAGT
TCAAGAAATTATTACTTGGCTAAAAGGACATCCTGTCAGTACTCTGTCTCGGTCTTCTTGTGACTTGCAC
ATTCTGGATGCAGCCATTGTTGAAAAAATCGAGGAAGAAGTTGAGAAGTGCAAGCAAAGAAAGAGCAACA
AGAAAGTCCGAGTAACAGTGAAGCCCCATTTGCTGTACAGACCCTTAGAGCAGCAGCATGGAGTCATTCC
TGATCGGGATGCCGAGTTCCGGCTCTTTGATCGCGTTGTGAACGTGAGAGAGAGCTTCTCCGTGCCAGTC
GGCCTTCGAGGCACCGTCATTGGAATTAAAGGGGCTAGCAGAGAAGCTGATGTACTATTTGAAGTATTAT
TTGATGAGGAATTTCCCGGAGGCTTAACAATAAGGTGCTCACCTGGTAGGGGATACCGACTGCCAACAAG
TGCCTTGGTGAACCTTTCTCATGGGAGTCGGTGTGAAACTGGAAACCAGAAGTTGACAGCCATTGTGAAA
CCACAACCTTCTGTGAGTCACTGTAGTGCAGCTCCCTCCGGGCACTTGGGAGGCCTCAACCACTCTCCTC
AGTCACCTTTTCTTCCTACTCAGGTACCTACAAAAGGTGATGATGAATTTTGCAACATTTGGCAATCTCT
ACAGGGAGCTGGAAAAATTCAACACTTGCAGCCGACAGTACAAGAGAAGGGTGCAGTTCTACCTCAAGAA
ATAAGTCAAGTAACTGAAGGTCATAAATCTGGCTTTACTGACCACAGTGTCAGACATCAGCAGAGAAAAC
ATGACTCGCAACGAAAATTTAAGGAAGAATATAAAAGTCCTAAAGCTGAGTGTCAGAGTCAAAAGTTGTC
CAGTAAACAGACTTCTGGAGGGTCTGCCAGATGTAGTATTAAACTATTGAAGAGAAATGAAAGTCCAGGA
ACTTCAGAAGCCCAGAAGGTTGTAACTAGTTACCCAAATGCAGTGCATAAGCCTCCCTCTGGGATTGAGA
ACTTTTTAGCATCTTTGAATCTCTCTAAGGAGAATGAAGCACAGCTACCTCATCATGGAGAGCCTCCAGA
TGAGGCGGATTTGTCCCCGCAGTCCTTTGCTATGAAAGGAACACGGATGCTTAAAGAAATTCTGAAAATT
GATAGCCCTGACACAAGAGACAGCAAGAATGATATGAAGAAATCTGATAATGAAGCCACTGTTTCTTCTA
GAAGAGATGAGCGTGGAGTGTCAGCACATCCTAAGCCAACATGCCATATGAACAAGCCTCATGGGACTAA
CGAGTTCCAAAATGTGGCATCGGTGGACAGTGTGTGTTGGCCAGGCCAGATGCCTCCTGTGTCCACACCA
GTAACTGAACTTTCTCGAATTTGTTCCCTTGTTGGAATGCCACAACCTGATTTCTCCTTTCTGCGAACAA
CACAGACAATGACAGTTTGTCAGGTAAAATTGTCTAATGGCTTACTGGTACATGGGCCACAGTGCCACTC
TGAAAGTGAAGCCAAGGAGAGAGCTGCTCTTTTTGCTTTACAGCAACTGGGCTCCTTGGGTGTGAGTTTT
CCTTTGCCTCCACCCATATTTACAAATTATCCTCCTGCGGTACCACCTGGAGCCGTCCCTCCTGTTTTTA
CCCAACCTACTGCTAATATAATGCCTTCATCGTCTCATCTCTTTGGCTCAGTGTCATGGAGACCACCAGT
GCCAGTTGCTGGGAATGCCTTCCACTATCCTTCATATCCTGGAACCATGCCCTTGGCTGGAGGAGTGCCA
GGCGGAGTGCACAGTCAGTTCATACCTCTGCAGGTTACCAAAAAAAGAGTTGCAAACAGAAAGAATTTTG
AGAATAAGGAGGCCCAGAGTTCTCAGGCCACACCACTTCAGACTAACAAGCCAGGGTCTTCTGAAGCCAC
CAAAATGACTCCACAAGAAAGTCCACCAGCCTCTTCATCATCCTCTCAGGCTGCCCAGCCCGTGTCTTCT
CATGTTGAAACTGCCTCCCAAGGCCATGTTGGGTCCCAACCAAGGTCAGCGCCAAGCTCCTCAAAAAGGA
AGTCGAGAAAACTGGCCGTCAACTTCAGCGTTTCTAAACCTTCGGAATAA

Translation (1719 aa):
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEV
LFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFM
ARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI
MLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIID
DWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREH
FSEVFVDLKWFESKVGNKYLNEAAGAAAEEAKNCKEKRKPKGQENSLSWAALDKSEGEGVASRDNFEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDEFLANQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS
DIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQHLMTSEDSPIIEYYPPDFKTDLNGKQQEW
EAVVLIPFIDETRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFTYSSPWPEKFPAIERCCTRYK
MISLDAWRVDINKNKITRVDQKALYFCGFPTLKHIKHKFFLKKSGVQVFQQSSRGENLMLEISVNAEPDE
LRIENIASAVLGKAVFVNWPHLEEARVVAVSDGETKFYIEEPPGTQKVYLGKTAPPSKVIQLTDKEQSNW
TKEIQGISEQYLRRKGIIINETSAVVYAQLLTGRKYQISQNGEVRLEKQWSKQILPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPPRTMVFMLGTPYYGCTGEVQDSGDLITEGRIRVVFSIPCEPNLDALIQNQHKYSIK
YNPGYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGNEWMYS
SAAEQLLAEYIERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLH
ILDAAIVEKIEEEVEKCKQRKSNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRESFSVPV
GLRGTVIGIKGASREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRCETGNQKLTAIVK
PQPSVSHCSAAPSGHLGGLNHSPQSPFLPTQVPTKGDDEFCNIWQSLQGAGKIQHLQPTVQEKGAVLPQE
ISQVTEGHKSGFTDHSVRHQQRKHDSQRKFKEEYKSPKAECQSQKLSSKQTSGGSARCSIKLLKRNESPG
TSEAQKVVTSYPNAVHKPPSGIENFLASLNLSKENEAQLPHHGEPPDEADLSPQSFAMKGTRMLKEILKI
DSPDTRDSKNDMKKSDNEATVSSRRDERGVSAHPKPTCHMNKPHGTNEFQNVASVDSVCWPGQMPPVSTP
VTELSRICSLVGMPQPDFSFLRTTQTMTVCQVKLSNGLLVHGPQCHSESEAKERAALFALQQLGSLGVSF
PLPPPIFTNYPPAVPPGAVPPVFTQPTANIMPSSSHLFGSVSWRPPVPVAGNAFHYPSYPGTMPLAGGVP
GGVHSQFIPLQVTKKRVANRKNFENKEAQSSQATPLQTNKPGSSEATKMTPQESPPASSSSSQAAQPVSS
HVETASQGHVGSQPRSAPSSSKRKSRKLAVNFSVSKPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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