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Report for CCDS79630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79630.1 Public Mus musculus 18 Pcdhgb4 23 108 98 CCDS HistoryNCBI Gene:93701Re-query CCDS DB by CCDS ID:79630.1Re-query CCDS DB by GeneID:93701See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79630.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000195363.1 ENSMUSP00000142227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195363.1Link to Ensembl Protein Viewer:ENSMUSP00000142227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195363Re-query CCDS DB by Protein ID:ENSMUSP00000142227
Original member Current member NCBI NM_033576.2 NP_291054.1 Accepted alive Link to Nucleotide Sequence:NM_033576.2Link to Protein Sequence:NP_291054.1Re-query CCDS DB by Nucleotide ID:NM_033576Re-query CCDS DB by Protein ID:NP_291054Link to BLAST:NP_291054.1

Chromosomal Locations for CCDS 79630.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37720554 37722917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2739 nt):
ATGCGGGAGGGCACTGCTGAGAGGGGCCGGGGACAGAGGCGGCCAATGCTCCTTCCCTTCCTGCTGCCTT
TGTTCTGCCCCACGCTCTCTGAGCAGATCCGCTACAAGATCCCCGAGGAAATGCCCACCGGCTCGGTAGT
GGGGAACCTCGCCAAGGACCTGGGTTTCAGTGTCCAGGAGTTACCGACGCGAAAGCTACGCATCAGTTCT
GAGAAGCCTTACTTCAGTGTGAGCTCAGAGAGCGGAGAGTTGCTAGTAAGCAGCAGGCTGGACAGGGAGC
AGATATGCGGGAAGAAGCTGATGTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTA
TCACTTGAGTGTGGAGCTGGAGGACATTAATGACCACACGCCAAAATTCGCGCACACTTCCTTTGAATTG
CAAATAAGTGAGTCCTCAAAACCAGGGACAAGATTTATCTTAGGATCCGCCCATGATGCAGATATCGGAA
CCAATTCTCTGCAGAATTACCAGCTTAGTCCCAATGATCATTTTTCACTGGTGAATAAAGAGAAATCAGA
CGGTAGTAAGTACCCTGAAATGATATTAAAGACAGCTCTAGACCGGGAAAAGCAGAAACTCTACCACTTG
ACCCTGACTGCTTTGGACTTTGGGCATCCACCCCTCAACAGCACTGCACAGATACAGGTCCTAGTGACCG
ATGCCAATGATAACCCTCCAGTGTTCAGCCAAGACATATACAGGGTGAGCCTTCCTGAAAACGTGTACCC
AGGAACCACCGTGCTTCGAGTGGTGGCCACAGACCAAGACGAGGGTGTCAACTCCGAGATCACGTTTTCT
TTCAGTGAAGCTGGCCAGGTTACCCAATTTAACCTGGATTCTAATACCGGAGAAATTACAACTCTGCATA
CATTAGATTTCGAAGAAGTCAAAGAATACTCCCTTGTTTTGGAAGCAAAGGACGGTGGGGGGATGATTGC
GCAATGTACGGTGGAAATAGAAGTCCTAGATGAGAACGACAATGTCCCTGAAGTGTTATTCCAATCTCTA
CCTGATCTCATAATGGAGGATGCTGAGCCAGGGACATATATCGCTCTGCTTAAAACCCGTGACAAAGATT
CTGGACGCAATGGAGAAGTTATCTGTAAATTAGAAGGCGGTGCTCCGTTTAAAATACTCACTTCTTCAGG
AAACACGTATAAACTAGTGACGGATGGAGTTCTAGATCGTGAGCAGAACCCGGAATACAACATTACTATT
AGAGCTACTGACAAGGGTGACCCGCCTCTCTCTTCCAGCTCAAGTGTCACCTTGCATATAGGCGATGTGA
ACGATAACGCCCCAGTTTTCACGAAGGTTTCATACCTGGTCCATGTTGCAGAAAACAATCCGCCTGGAGC
CTCCATCGCTCAAGTCAGCGCCTCAGACCCGGATTTGGGGGCCAATGGCCAGGTTACCTATTACATCATA
GCCAGCGACCTGGAGCCTGAATCTCTGTGGTCCTACGTGACCATAAACGCGCAAAGCGGAGTGCTGTTCG
CACAGCGCGCCTTCGACCACGAACAACTGCGCTCCTTCCAGCTGACACTGCAGGCGCGGGACCACGGATC
GCCCACACTCAGCGCCAATGTGAGCATGCGCTTGTTGGTGGGTGACCGCAACGACAACGCGCCCCGAGTG
CTGTATCCCACGCTCGAGCCCGACGGCTCTGCGCTCTTCGACATGGTGCCGCGCTCTGCCGAGCCCGGAT
ACCTGGTCACCAAGGTGGTGGCTGTGGATGCAGACTCGGGACACAATGCCTGGCTGTCTTACCATGTGCT
GCAGGCCAGTGACCCTGGGCTCTTCAGCCTGGGACTGCGCACAGGCGAGGTGCGCACAGCGCGTGCCCTG
GGAGACAGGGACTCAGCGCGGCAGCGCCTTCTGGTCGCTGTGCGTGATGGTGGACAACCACCGCTCTCGG
CTACAGCCACGCTGCACCTCATCTTCGCTGACAGCCTGCAAGAGGTCCTGCCAGACCTCAGCGATGACCC
TTTGCCCCCGGACCCTCAATCTGAGCTGCAGTTCTACTTGGTGGTGGCCTTGGCCTTGATTTCTGTCCTT
TTCCTCCTGGCTGTGATTCTAGCCATTGCACTTCGACTGCGACACTCCTCCAGCAGGAAGGCATGGGGCT
GCTTTCAGTCGGAAGTGGTGGTTCCCCCCAACTACAGTGAGGGGACTTTGCCGTATTCCTACAATCTGTG
TGCTGCAGAGTTTAACTCCCTAACATGTAATGATCAGTTGAAATCAGGACAAGATCTACAATTTGCAGAT
TCAGCGGGGGCCTTGTTTCCACTTTGTAATTCCAATGAGTCAACCTCCCATCAGCAAGCCCCGCCCAACA
CTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCAC
CTGGCCCAACAACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCT
GATGGGAGCTCTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTA
CCCTGCAGCACGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGC
CGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAG
AAGAAGTAA

Translation (912 aa):
MREGTAERGRGQRRPMLLPFLLPLFCPTLSEQIRYKIPEEMPTGSVVGNLAKDLGFSVQELPTRKLRISS
EKPYFSVSSESGELLVSSRLDREQICGKKLMCALEFEAVAENPLNFYHLSVELEDINDHTPKFAHTSFEL
QISESSKPGTRFILGSAHDADIGTNSLQNYQLSPNDHFSLVNKEKSDGSKYPEMILKTALDREKQKLYHL
TLTALDFGHPPLNSTAQIQVLVTDANDNPPVFSQDIYRVSLPENVYPGTTVLRVVATDQDEGVNSEITFS
FSEAGQVTQFNLDSNTGEITTLHTLDFEEVKEYSLVLEAKDGGGMIAQCTVEIEVLDENDNVPEVLFQSL
PDLIMEDAEPGTYIALLKTRDKDSGRNGEVICKLEGGAPFKILTSSGNTYKLVTDGVLDREQNPEYNITI
RATDKGDPPLSSSSSVTLHIGDVNDNAPVFTKVSYLVHVAENNPPGASIAQVSASDPDLGANGQVTYYII
ASDLEPESLWSYVTINAQSGVLFAQRAFDHEQLRSFQLTLQARDHGSPTLSANVSMRLLVGDRNDNAPRV
LYPTLEPDGSALFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARAL
GDRDSARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDDPLPPDPQSELQFYLVVALALISVL
FLLAVILAIALRLRHSSSRKAWGCFQSEVVVPPNYSEGTLPYSYNLCAAEFNSLTCNDQLKSGQDLQFAD
SAGALFPLCNSNESTSHQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAA
DGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKE
KK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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