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Report for CCDS78563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78563.1 Public Mus musculus 1 Lman2l 23 108 98 CCDS HistoryNCBI Gene:214895Re-query CCDS DB by CCDS ID:78563.1Re-query CCDS DB by GeneID:214895See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115011.7 ENSMUSP00000110663.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115011.7Link to Ensembl Protein Viewer:ENSMUSP00000110663.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115011Re-query CCDS DB by Protein ID:ENSMUSP00000110663
Original member Current member NCBI NM_001310517.1 NP_001297446.1 Accepted alive Link to Nucleotide Sequence:NM_001310517.1Link to Protein Sequence:NP_001297446.1Re-query CCDS DB by Nucleotide ID:NM_001310517Re-query CCDS DB by Protein ID:NP_001297446Link to BLAST:NP_001297446.1

Chromosomal Locations for CCDS 78563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36424361 36424503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36424838 36424957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36428102 36428216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36428300 36428461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36429423 36429455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36438750 36438832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36439609 36439726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36443491 36443609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36445050 36445233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCGGCGGCTTCGAGACCCTCCTGGTGGCAGCGGTGGCGGCGGCGCGCGTGGGCTCGGGACGGGGCCA
AGCTTTTGCTCTTTCTCCTTCTGTTGGGGTCTGGGCCGGGGCCGCGGCATGTCAGGGCGGGTCAAGCGGT
GGAGTACTTGAAACGGGAGCACTCGCTGTCGAAGCCCTACCAGGGTGTGGGAACAAGCAGTTCTTCGCTA
TGGAACCTGATGGGCAACGCCATGGTGATGACACAGTACATCCGCCTCACTCCAGATATGCAAAGTAAAC
AGGGTGCCTTGTGGAACCGGGTGCCATGTTTCCTGAAAGACTGGGAACTGCAGGTGCACTTCAAGATTCA
CGGCCAAGGGAAGAAGAATCTGCACGGAGACGGCTTGGCAATCTGGTACACAAAGGACCGAATGCAGCCA
GGGCCTGTGTTTGGAAACATGGACAAATTTGTGGGGCTGGGAGTGTTTGTAGACACCTATCCCAATGAGG
AGAAGCAGCACGAGGCCCAGAAGAGGCGCTATTCTCCAGGAGTCCAGCGGGTATTCCCCTACATCTCAGC
CATGGTGAACAACGGCTCCCTCAGCTATGATCACGAGCGGGATGGGCGGCCTACAGAGCTGGGTGGCTGC
ACAGCCATTGTCCGAAATATCCGTTATGACACCTTCCTCGTGATTCGCTATGTCAAGAGGCATCTGACGA
TAATGATGGATATTGATGGCAAACATGAGTGGAGGGACTGCATTGAGATGCCCGGGGTCCGGCTCCCCCG
GGGCTATTACTTCGGCACTTCCTCCATTACTGGGGATCTCTCTGATAACCATGATGTCATTTCCCTCAAG
TTGTTTGAGCTGACTGGAGTGAGGACCCCAGAAGAAGAAAAGCTACATCGAGATGTATTCCTGCCCTCGG
TGGACAATCTGAAGCTGCCAGAGATGACAGTGCCACCAACGCCCCTGAGTGGCCTGGCTCTCTTCCTTAT
TGTCTTCTTCTCCTTGGTGTTTTCCGTATTTGCCATTGTCATCGGGATCATACTCTACAACAAATGGCAA
GACCAGAGCCGGAAACGCTTCTACTGA

Translation (358 aa):
MAAASRPSWWQRWRRRAWARDGAKLLLFLLLLGSGPGPRHVRAGQAVEYLKREHSLSKPYQGVGTSSSSL
WNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLKDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQP
GPVFGNMDKFVGLGVFVDTYPNEEKQHEAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGC
TAIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLK
LFELTGVRTPEEEKLHRDVFLPSVDNLKLPEMTVPPTPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQ
DQSRKRFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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