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Report for CCDS72425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72425.1 Public Mus musculus X H2ab1 23 108 98 CCDS HistoryNCBI Gene:100039319Re-query CCDS DB by CCDS ID:72425.1Re-query CCDS DB by GeneID:100039319See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 72425.1
This gene lacks publicly available transcript support, but it is supported by data in PMID:20008104.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 72425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122446.1 ENSMUSP00000138181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122446.1Link to Ensembl Protein Viewer:ENSMUSP00000138181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122446Re-query CCDS DB by Protein ID:ENSMUSP00000138181
Original member Current member NCBI NM_001102665.1 NP_001096135.1 Accepted alive Link to Nucleotide Sequence:NM_001102665.1Link to Protein Sequence:NP_001096135.1Re-query CCDS DB by Nucleotide ID:NM_001102665Re-query CCDS DB by Protein ID:NP_001096135Link to BLAST:NP_001096135.1

Chromosomal Locations for CCDS 72425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 117014757 117015104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGCCAAGGAACAGGGAAAACTGTCTTCGAGAGTCTTCAGGTCGCCGCCACCGTCGCTCCCGCACCTCCA
GAGCTGAGCTGATCTTTGCAGTGAGCCTGGTGGAACAGCATCTGAGGGAGATTAGCCGTGCCTGGAGGCT
CAGTGATATGGTGCCCATCTTCCTGGCAGCCATCCTGGAGTCCCTCACCCGCAGGTTGCTGGAGCTTGCG
GGCAATGAGGCCCAACGCAGAGGTACCGAGAGGCGCATCACTCCTGAACTGCTGGACTTGGCTGTCTACA
GCAATATGGAGCTAAGTGATGTGTTCCAATTCATCACCATCTCCCAGGTGGCCCCGGCTCATCGCTAG

Translation (115 aa):
MPRNRENCLRESSGRRHRRSRTSRAELIFAVSLVEQHLREISRAWRLSDMVPIFLAAILESLTRRLLELA
GNEAQRRGTERRITPELLDLAVYSNMELSDVFQFITISQVAPAHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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