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Report for CCDS6549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6549.1 Public Homo sapiens 9 DCAF12 24 110 108 CCDS HistoryNCBI Gene:25853Re-query CCDS DB by CCDS ID:6549.1Re-query CCDS DB by GeneID:25853See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361264.9 ENSP00000355114.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361264.9Link to Ensembl Protein Viewer:ENSP00000355114.3Re-query CCDS DB by Nucleotide ID:ENST00000361264Re-query CCDS DB by Protein ID:ENSP00000355114
Original member Current member NCBI NM_015397.4 NP_056212.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015397.4Link to Protein Sequence:NP_056212.1Re-query CCDS DB by Nucleotide ID:NM_015397Re-query CCDS DB by Protein ID:NP_056212Link to BLAST:NP_056212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056212.1 453 Q5T6F0 453 100% 0 0

Chromosomal Locations for CCDS 6549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34088350 34088508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34089412 34089590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34093286 34093448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34096716 34096781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34098324 34098517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34106434 34106494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34107359 34107565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34125023 34125277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34126354 34126431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCCCGGAAAGTAGTTAGCAGGAAGCGGAAAGCGCCCGCCTCGCCGGGAGCTGGGAGCGACGCTCAGG
GCCCGCAGTTTGGCTGGGATCACTCGCTTCACAAAAGGAAAAGACTTCCTCCTGTGAAGAGATCCTTAGT
ATACTACTTGAAGAACCGGGAAGTCAGGCTACAGAATGAAACCAGCTACTCTCGAGTGTTGCATGGTTAT
GCAGCACAGCAACTTCCCAGTCTCCTGAAGGAGAGAGAGTTTCACCTTGGGACCCTTAATAAAGTGTTTG
CATCTCAGTGGTTGAATCATAGGCAAGTGGTGTGTGGCACAAAATGCAACACGCTATTTGTCGTAGATGT
CCAGACAAGCCAGATCACCAAGATCCCCATTCTGAAAGACCGGGAGCCTGGAGGTGTGACCCAGCAGGGC
TGTGGTATCCATGCCATCGAGCTGAATCCTTCTAGAACACTGCTAGCCACTGGAGGAGACAACCCCAACA
GTCTTGCCATCTATCGACTACCTACGCTGGATCCTGTGTGTGTAGGAGATGATGGACACAAGGACTGGAT
CTTTTCCATCGCATGGATCAGCGACACTATGGCAGTGTCTGGCTCACGTGATGGTTCTATGGGACTCTGG
GAGGTGACAGATGATGTTTTGACCAAAAGTGATGCGAGACACAATGTGTCACGGGTCCCTGTGTATGCAC
ACATCACTCACAAGGCCTTAAAGGACATCCCCAAAGAAGACACAAACCCTGACAACTGCAAGGTTCGGGC
TCTGGCCTTCAACAACAAGAACAAGGAACTGGGAGCAGTGTCTCTGGATGGCTACTTTCATCTCTGGAAG
GCTGAAAATACACTATCTAAGCTCCTCTCCACCAAACTGCCATATTGCCGTGAGAATGTGTGTCTGGCTT
ATGGTAGTGAATGGTCAGTTTATGCAGTGGGCTCCCAAGCTCATGTCTCCTTCTTGGATCCACGGCAGCC
ATCATACAACGTCAAGTCTGTCTGTTCCAGGGAGCGAGGCAGTGGAATCCGGTCAGTGAGTTTCTACGAG
CACATCATCACTGTGGGAACAGGGCAGGGCTCCCTGCTGTTCTATGACATCCGAGCTCAGAGATTTCTGG
AAGAGAGGCTCTCAGCTTGTTATGGGTCCAAGCCCAGACTAGCAGGGGAGAATCTGAAACTAACCACTGG
CAAAGGCTGGCTGAATCATGATGAAACCTGGAGGAATTACTTTTCAGACATTGACTTCTTCCCCAATGCT
GTTTACACCCACTGCTACGACTCGTCTGGAACGAAACTCTTTGTGGCAGGAGGTCCCCTCCCTTCAGGGC
TCCATGGAAACTATGCTGGGCTCTGGAGTTAA

Translation (453 aa):
MARKVVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETSYSRVLHGY
AAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQG
CGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLW
EVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWK
AENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYE
HIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNA
VYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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