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Report for CCDS58218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58218.1 Public Homo sapiens 12 LMNTD1 24 110 108 CCDS HistoryNCBI Gene:160492Re-query CCDS DB by CCDS ID:58218.1Re-query CCDS DB by GeneID:160492See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58218.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539744.5 ENSP00000443132.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539744.5Link to Ensembl Protein Viewer:ENSP00000443132.1Re-query CCDS DB by Nucleotide ID:ENST00000539744Re-query CCDS DB by Protein ID:ENSP00000443132
Original member Current member NCBI NM_001256266.1 NP_001243195.1 Accepted alive Link to Nucleotide Sequence:NM_001256266.1Link to Protein Sequence:NP_001243195.1Re-query CCDS DB by Nucleotide ID:NM_001256266Re-query CCDS DB by Protein ID:NP_001243195Link to BLAST:NP_001243195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243195.1 291 Q8N9Z9-2 291 100% 0 0

Chromosomal Locations for CCDS 58218.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25503760 25503800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25518795 25518967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25519858 25520075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25526099 25526218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25526769 25526955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25546374 25546510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGATTGGGGATGGAGAAGATTATTTCCTTTCTTTGTTTGGTGATTCAAAGAAACTTACAGCACACTCAA
ACTACACTCAGAAAACTTTAAAATACTTTTCTATGATTCTTGAAGAAGTTGGCCAATTTACCTCCAGTTC
TCTTGGAGATGTTGAAATAGCTGAAGTGAATGTCAAGGGTTTGTTCGTGAAGCTCATTAACTCTTCCCTT
GACAAAGAAATGGCAATTGGAGATCATATTCTCCAGCAAAATGTGAATGGACAAACCATTTCTTTGTACC
GATTCCTTCCAAACATCGTAATGCAGGCAAATTCCACAGTAACAGTGTGGGCAGCAGCATCTGAAGCAAA
GCATCAACCTCCATCAGATTTTCTTTGGAAGGAACAAGACAAGTTTAGAGCAAGTCCTGATTGTATAACA
ATCCTGTGCAAACCGAACGGTCAAGCCATTGCGTGGTACACCCCTATCCACTGGAAGCAAGCGTGGGAAA
AATTAGATGCTGACGTTGAATTTAACAGATGTTCAGTAGTATCTCCAACATTCCGAAAGCGTGTGTTTCA
GTGGACAGCATCTACAGCTACAATAACTAAAGAAAAACAAGATCAACCTAAGAAAGATATCTCAAATTAT
CAGGTGGAACAAGCTCAAGTTCTTCTTAAGAGAGAGAAGGAAATCCCACCAACCGTTTTCCCTAATCGCA
GCCCTTGGTGCCAGAATCCCTATGTCTCTGCACATCCTTACTGTCCTCTGATTGAACCACACAATACATC
CACCGCTGGAGGCAGATTGGATAGACAGCCCAGGACTCGGTCAACCAGACCTAATCGAGCCTCAGGGTCT
AAGAAAAAGAAGACATCTGAGTCACAAAAGCAATAA

Translation (291 aa):
MIGDGEDYFLSLFGDSKKLTAHSNYTQKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSL
DKEMAIGDHILQQNVNGQTISLYRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCIT
ILCKPNGQAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNY
QVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRASGS
KKKKTSESQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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