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Report for CCDS57313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57313.1 Public Mus musculus 4 Zfp534 23 108 98 CCDS HistoryNCBI Gene:100503584Re-query CCDS DB by CCDS ID:57313.1Re-query CCDS DB by GeneID:100503584See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117638.1 ENSMUSP00000113561.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117638.1Link to Ensembl Protein Viewer:ENSMUSP00000113561.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117638Re-query CCDS DB by Protein ID:ENSMUSP00000113561
Original member Current member NCBI NM_001127188.2 NP_001120660.1 Accepted alive Link to Nucleotide Sequence:NM_001127188.2Link to Protein Sequence:NP_001120660.1Re-query CCDS DB by Nucleotide ID:NM_001127188Re-query CCDS DB by Protein ID:NP_001120660Link to BLAST:NP_001120660.1

Chromosomal Locations for CCDS 57313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147674225 147676053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147678217 147678343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147682267 147682296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGAGTGTGTGTCTGGTAAATACACCACAGGGTCTGTTAACTTTCAAGGACGTGGCCTTGGACTTCTCAC
TGGAGGAATGGGAATGTCTCAGTTTTGCTCAGAGGTCATTGTACATGGATGTGATGTTGGAGAATTACAA
CAATCTGTTGTTTGTGGAAAATCATTGCATACGTGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAG
TACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGCAATGTCATTC
TTGAATCCCTCCAGTGTACACCTTACAAAACTAATCACAGCTCTGATGCTCTTCAATTCTCGACCCAAAA
AAGACTTAAGCCCAGGAACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTTTGTTT
TCTACCATTAGTCTCAATCAAGGAATTAACATGCAGAAGAAAAAACACAACCGAAATGCAGAATTAGACA
AGATTTTTGTTTCTAAACATAAAGTCATGGTGAAAAAAGACAATATTGCAGGGAACCCTTACAAATGTAG
TGAATTTCACAAATATCTTACCCAGAGAGAAAAACTACAAAGTCAGCAGAGAATTTATCATGGAAAGAAA
CCTTACGAAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGATCCATCTTAGTATTCATCAGGGAATTC
ATACAGAAGAGAAAATTTACAAATGTAGTGAATGTGACAAATGTTTTAAAAACAAATTCAATCTTACTAT
GCATCAGAGAATTCATAAAGGAGAGAAACCTTACAAATGCAGTGAATGTGGCAAATGCTTTACTGATAAA
ACCAGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGGCAAAT
GCTTTACTGAAAAAAGCAGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAG
TGAATGTGGCAAATGCTTTACTGAAAAAAGCAGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAA
CCTTACAAATGCAGTGAATGTGACAAATGCTTTACCCAACAATCCTATCTTAGTATTCATCAGAGAATTC
ATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAAACAATCCAATCTTAGTAT
TCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCCAACAA
TCCCATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAAT
GCTTTACCCAACAATCCTATCTTAGTATTCATCAGAGAATTCATGCAGGAGAGAAACCTTACAAATGCAG
TGAATGTGACAAATGCTTTACTACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAA
CCTTACAAATGTAGTGAATGTGGCAAATGCTTTACTGAAAAAAGCAGTCTGAGAATTCATCAGAGAATTC
ATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAAACAATCCAAACTTAGTAT
TCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTAATGAAAAA
AACAGTCTGAAAATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGTAGTGAATGTGACAAAT
GCTTTACCCAAAAATCCTATCTTAATATTCATCAGAGAATTCATGCAGGAGAGAAACCTTACAAATGCAG
TGAATGTGACAAATGCTTTACTACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAA
CCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAATCCCAACTTAGTATTCATCAGAAAATTC
ATACAGGAGAGAAACCTTACAAATAG

Translation (661 aa):
MSVCLVNTPQGLLTFKDVALDFSLEEWECLSFAQRSLYMDVMLENYNNLLFVENHCIRGKNGKVLDQDSQ
YIVHEHMNIQEKSSKWDKLSNVILESLQCTPYKTNHSSDALQFSTQKRLKPRNTKEVCKYNDSVNSLSLF
STISLNQGINMQKKKHNRNAELDKIFVSKHKVMVKKDNIAGNPYKCSEFHKYLTQREKLQSQQRIYHGKK
PYESSKSDKCFTHQIHLSIHQGIHTEEKIYKCSECDKCFKNKFNLTMHQRIHKGEKPYKCSECGKCFTDK
TSLRIHQRIHTGEKPYKCSECGKCFTEKSSLRIHQRIHTGEKPYKCSECGKCFTEKSSLRIHQRIHTGEK
PYKCSECDKCFTQQSYLSIHQRIHTGEKPYKCSECDKCFTKQSNLSIHQRIHTGEKPYKCSECDKCFTQQ
SHLSIHQRIHTGEKPYKCSECDKCFTQQSYLSIHQRIHAGEKPYKCSECDKCFTTKGNLIIHQRIHTREK
PYKCSECGKCFTEKSSLRIHQRIHTGEKPYKCSECDKCFTKQSKLSIHQRIHTGEKPYKCSECEKCFNEK
NSLKIHQRIHTGERPYKCSECDKCFTQKSYLNIHQRIHAGEKPYKCSECDKCFTTKGNLIIHQRIHTREK
PYKCSECDKCFTQKSQLSIHQKIHTGEKPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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