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Report for CCDS57291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57291.1 Public Mus musculus 4 Cyp4a31 23 108 98 CCDS HistoryNCBI Gene:666168Re-query CCDS DB by CCDS ID:57291.1Re-query CCDS DB by GeneID:666168See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030480.3 ENSMUSP00000030480.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030480.3Link to Ensembl Protein Viewer:ENSMUSP00000030480.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030480Re-query CCDS DB by Protein ID:ENSMUSP00000030480
Original member Current member NCBI NM_001252539.1 NP_001239468.1 Accepted alive Link to Nucleotide Sequence:NM_001252539.1Link to Protein Sequence:NP_001239468.1Re-query CCDS DB by Nucleotide ID:NM_001252539Re-query CCDS DB by Protein ID:NP_001239468Link to BLAST:NP_001239468.1

Chromosomal Locations for CCDS 57291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115563717 115563905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115565010 115565154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115566480 115566607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115569709 115569833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115570186 115570340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115570763 115570869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115570958 115571148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115571245 115571378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115574700 115574764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115574907 115574966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115577936 115577968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGAGTGTCTCTGCTCTAAGCCTGACCCGATTTGCAGGCAGCCTCTCTGGCTTCCTCCAAGTGGCCTCTG
TGTTCTGTCTGCTCCTGCTGCTGGTGAAAGCTGTCCAGGTCTACCTGCACAGGAAATGGCTACTCAAGGC
TCTCCAGCAGTTCCCATCACCGCCCTTTCACTGGTTCTTTGGGCATGAGCAGTTCAAAGGTGACCAAGAA
CTACAGGAAATTGTGTCATGCATAGAGAACTTCCCAAGTGCCTTTCCTCGATGGTTCTGGGGGAGCAAGG
CCTACTTAACTGTCTATGACCCTGACTACATGAAAGTGATTCTGGGGCGATCAGGGTATGGTTTGCTCCT
GTTAAACGGACAGTCATGGTTCCAGCACCGGAAGATGCTAACCCCAGCCTTCCACTATGACATTCTGAAA
ACCTATGTGAAAAACATGGCTGACTCCATTCGATTGATGCTAGACAAATGGGAACGGCTGGCTGGTCAGG
ACTCCTCTATAGAGATCTTTCAACACATCTCTTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAG
CCACAAGGGCAGTGTTCAGGTAGATGGAAATTACAAGACCTACCTCCAGGCCATTGGGGACTTGAATAAC
CTAGTTCACTCTCGTGTGAGGAATATGTTTCATCAGAATGATACTATCTACAAACTTTCTTCCAATGGCC
GCTTGTCCAACCAAGCTTGTCAACTTGCCCATGATCACACAGATGGAGTGATCAAGATGAGAAAGGATCA
GCTGCAGGATGAGGGAGAGCTGGAAAATATCAAGAAGAAGAGACGTTTGGATTTTCTGGATATCCTCTTA
TTTGCCAGAATGGAGAATGAGGACAGCATGTCTGACAAGGACCTTCGTGCTGAGGTGGACACATTCATGA
TCGAGGGCCATGACACCACAGCCAGTGGAGTCTCCTGGATCTTCTATGCTCTGGCCACACACCCTGAGCA
CCAACAGAGATGCAGAGAGGAAGTTCAGAGTCTACTGGGGGATGGATCCTCTATCACCTGGGATCACCTA
GACCAGATTCCCTATACCACAATGTGCATCAAGGAGGCCCTAAGGCTCTACCCACCTGTCCCAAGCATTG
GCAGAGAACTCAGTACATCTGTCACCTTTCCTGATGGATGTTCTTTACCTAAAGGTGTCCAGGTCACACT
CTCCATTTATGGTCTCCACCACAACCCGAAGGTGTGGCCAAACCCAGAGGTTTGCACCAGACTCTCCCCG
ACACAGCCACTCATTCCTGCCCTTCTCAGGAGGAGCCAGGAACTGCATTGGGAAACAATTTGCTATGAGT
GA

Translation (443 aa):
MSVSALSLTRFAGSLSGFLQVASVFCLLLLLVKAVQVYLHRKWLLKALQQFPSPPFHWFFGHEQFKGDQE
LQEIVSCIENFPSAFPRWFWGSKAYLTVYDPDYMKVILGRSGYGLLLLNGQSWFQHRKMLTPAFHYDILK
TYVKNMADSIRLMLDKWERLAGQDSSIEIFQHISLMTLDTVMKCAFSHKGSVQVDGNYKTYLQAIGDLNN
LVHSRVRNMFHQNDTIYKLSSNGRLSNQACQLAHDHTDGVIKMRKDQLQDEGELENIKKKRRLDFLDILL
FARMENEDSMSDKDLRAEVDTFMIEGHDTTASGVSWIFYALATHPEHQQRCREEVQSLLGDGSSITWDHL
DQIPYTTMCIKEALRLYPPVPSIGRELSTSVTFPDGCSLPKGVQVTLSIYGLHHNPKVWPNPEVCTRLSP
TQPLIPALLRRSQELHWETICYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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