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Report for CCDS55374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55374.1 Public Homo sapiens X RAI2 24 110 108 CCDS HistoryNCBI Gene:10742Re-query CCDS DB by CCDS ID:55374.1Re-query CCDS DB by GeneID:10742See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415486.7 ENSP00000392578.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415486.7Link to Ensembl Protein Viewer:ENSP00000392578.2Re-query CCDS DB by Nucleotide ID:ENST00000415486Re-query CCDS DB by Protein ID:ENSP00000392578
Original member Current member NCBI NM_001172732.2 NP_001166203.2 Accepted alive Link to Nucleotide Sequence:NM_001172732.2Link to Protein Sequence:NP_001166203.2Re-query CCDS DB by Nucleotide ID:NM_001172732Re-query CCDS DB by Protein ID:NP_001166203Link to BLAST:NP_001166203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166203.2 480 Q9Y5P3-2 480 100% 0 0

Chromosomal Locations for CCDS 55374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 17800418 17801725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17801876 17802010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGACGACCTGCAGTCCCAGAACCTCTCCATGGACATGACTGACTCCCCTCCTGCCTTGGCTAATAACA
GACTGGAGAATGGCATGGCTCAGCTGATCACCACCGAGGCCTGGAACATCAACTCCACTGACCTGGTGGA
GGGAAGCTCCGCACCAGAGCTCAATCCGAATGGCAATGCCACCTACGTCATGACCACCCAGGGCCCCGTG
CAACTGCCCGTGGTGCTGGAGCAGCACGTCTTTCAGCACCTCAACTCCCCTCTGGTCCTGCCGCAGGAGG
CCCCATGCTCCTCCAGTACCATCCACAACAACCTCTTCCAGGGAGCGGAGGACCCCGAGGCCCAGCCCCA
GCTCCTGGACCTGAGGATCCCCAGCCAGCCGCAGGAGCCCACTTTGCCATTTGAAGCTGTGCTCCAGAAT
TTGTTTCCCTCCCAGGGCACTCTCGGGCCCCCACCCTGTCAGCCTCCTCCTGGCTATGCCCCTGTGCCCC
CACAGCCTTTTAGCTCCCCCTTGTCCCCCCTGGTCCCACCAGCCACCCTCTTGGTGCCGTATCCTGTAAT
CGTCCCCTTGCCTGTGCCAGTCCCTATTCCCATCCCCATCCCGATGCCTCAGAGTTCTGAATCCAAGTTC
AGCTCCAGTTTCCCCAAGCCACCATCTTCCTTCGGCCTGCACCCCTTTAAAGGCACCCAGACCCCTCTGG
AAAAAGATGAACTGAAGCCCTTTGACATCCTCCAGCCTAAGGAGTACTTCCAGCTCAGCCGCCACACGGT
CATTAAGATGGGAAGTGAGAACGAGGCCCTGGATCTCTCCATGAAGTCAGTGCCCTGGCTCAAGGCTGGT
GAAGTCAGTCCCCCAATCTTCCAGGAAGATGCAGCCCTAGACCTGTCAGTGGCAGCCCACCGGAAATCCG
AGCCTCCCCCTGAGACACTGTATGACAGTGGTGCATCAGTGGACAGCTCAGGTCACACAGTGATGGAGAA
ACTTCCCAGTGGCATGGAAATTTCTTTTGCCCCTGCCACGTCCCATGAGGCCCCAGCCATGATGGATAGT
CACATCAGCAGCAGTGATGCTGCTACCGAGATGCTCAGCCAGCCCAACCACCCCAGCGGCGAAGTCAAGG
CTGAAAATAACATTGAGATGGTGGGCGAGTCCCAGGCGGCCAAGGTCATTGTCTCTGTCGAAGATGCTGT
GCCTACCATATTCTGTGGCAAGATCAAAGGCCTCTCAGGGGTGTCCACCAAAAACTTCTCCTTCAAAAGA
GAAGACTCCGTGCTTCAGGGCTATGACATCAACAGCCAAGGGGAAGAGTCCATGGGAAATGCAGAGCCCC
TTAGGAAACCCATCAAAAACCGGAGCATAAAGTTAAAGAAAGTGAACTCCCAGGAAATACACATGCTCCC
AATCAAAAAACAACGGCTGGCCACCTTTTTTCCAAGAAAGTAA

Translation (480 aa):
MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVEGSSAPELNPNGNATYVMTTQGPV
QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEPTLPFEAVLQN
LFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPLPVPVPIPIPIPMPQSSESKF
SSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYFQLSRHTVIKMGSENEALDLSMKSVPWLKAG
EVSPPIFQEDAALDLSVAAHRKSEPPPETLYDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDS
HISSSDAATEMLSQPNHPSGEVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKR
EDSVLQGYDINSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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