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Report for CCDS53824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53824.1 Public Homo sapiens 12 POLR3B 24 110 108 CCDS HistoryNCBI Gene:55703Re-query CCDS DB by CCDS ID:53824.1Re-query CCDS DB by GeneID:55703See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539066.5 ENSP00000445721.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539066.5Link to Ensembl Protein Viewer:ENSP00000445721.1Re-query CCDS DB by Nucleotide ID:ENST00000539066Re-query CCDS DB by Protein ID:ENSP00000445721
Original member Current member NCBI NM_001160708.2 NP_001154180.1 Accepted alive Link to Nucleotide Sequence:NM_001160708.2Link to Protein Sequence:NP_001154180.1Re-query CCDS DB by Nucleotide ID:NM_001160708Re-query CCDS DB by Protein ID:NP_001154180Link to BLAST:NP_001154180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154180.1 1075 Q9NW08-2 1075 100% 0 0

Chromosomal Locations for CCDS 53824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106366670 106366722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106369275 106369350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106369583 106369683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106376359 106376450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106378267 106378384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106380031 106380139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106393031 106393153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106405857 106405976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106410826 106410960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106427197 106427358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106430273 106430473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106432318 106432480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106433719 106433872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106437057 106437131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106437681 106437779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106444463 106444590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106454502 106454711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106457138 106457296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106459251 106459368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106463478 106463620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106496055 106496158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106496752 106496918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106501323 106501436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106504081 106504254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106509420 106509549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3228 nt):
ATGAAAGCCAATGAAAAGGTTACAAGTGACGCTGACCCTATGTGGTACTTAAAATATCTTAATATCTATG
TTGGGCTTCCTGATGTTGAAGAAAGCTTCAATGTAACTAGACCAGTGTCCCCTCATGAGTGCCGTTTGAG
AGACATGACATACTCTGCCCCTATTACAGTGGATATTGAATATACCCGAGGCAGCCAGAGGATCATCCGC
AATGCCTTACCTATCGGCAGAATGCCCATAATGCTACGTAGTTCAAACTGTGTTCTTACAGGAAAAACGC
CAGCAGAATTTGCCAAACTGAACGAATGTCCCTTAGATCCAGGTGGCTACTTCATTGTTAAAGGAGTAGA
AAAAGTTATTCTTATCCAAGAGCAGCTGTCTAAGAACAGGATCATCGTGGAGGCTGATAGAAAAGGGGCT
GTTGGAGCTTCAGTTACCAGCTCTACCCATGAGAAAAAAAGCAGAACCAATATGGCTGTGAAACAAGGAC
GATTTTATTTGAGGCATAATACTTTGTCAGAAGATATACCCATTGTCATCATATTTAAGGCCATGGGTGT
TGAGAGTGACCAGGAAATTGTGCAGATGATTGGAACAGAGGAGCACGTGATGGCTGCATTTGGGCCCAGT
CTGGAAGAGTGCCAGAAAGCTCAGATTTTCACACAGATGCAGGCATTAAAATATATAGGGAACAAAGTAA
GAAGGCAAAGGATGTGGGGAGGTGGACCAAAGAAAACCAAAATAGAAGAAGCAAGAGAGCTCCTGGCTTC
CACCATTCTGACCCATGTCCCAGTTAAGGAATTCAATTTCCGAGCCAAATGTATCTATACTGCAGTGATG
GTGCGAAGAGTTATTCTGGCCCAAGGAGATAATAAAGTTGACGACAGAGATTATTATGGTAACAAGCGAC
TGGAATTGGCAGGACAGCTTTTATCTCTTCTTTTTGAAGACTTGTTCAAAAAATTTAATTCTGAAATGAA
AAAGATTGCCGACCAGGTGATTCCTAAGCAAAGAGCAGCCCAGTTTGATGTTGTCAAACACATGCGCCAA
GACCAGATCACCAATGGCATGGTGAATGCTATTTCTACCGGAAATTGGTCTTTAAAGAGATTTAAAATGG
ACCGCCAGGGTGTAACCCAAGTGCTGTCTCGCTTGTCATATATATCCGCACTGGGCATGATGACAAGAAT
CTCTTCCCAGTTTGAAAAAACGAGAAAAGTGAGTGGTCCTCGCTCCCTCCAGCCATCTCAGTGGGGAATG
CTGTGTCCTTCGGACACTCCTGAAGGAGAGGCATGTGGTTTGGTTAAAAACTTGGCCCTTATGACACACA
TCACAACTGATATGGAAGATGGACCCATTGTTAAATTAGCCAGTAACTTGGGAGTAGAAGATGTGAATTT
ATTATGTGGGGAAGAGCTCTCTTACCCAAATGTGTTTCTTGTCTTTCTTAATGGTAACATCTTAGGTGTC
ATTCGAGACCACAAAAAGCTAGTGAATACATTTCGACTCATGAGAAGAGCAGGATATATCAATGAATTTG
TTTCCATCTCAACAAATCTTACAGATCGATGTGTCTATATTTCTTCTGATGGGGGAAGGCTATGCAGACC
CTACATAATTGTCAAGAAACAGAAGCCAGCAGTCACAAATAAACATATGGAAGAGCTGGCCCAAGGGTAC
AGGAATTTTGAAGATTTCTTACATGAGAGTCTGGTTGAATATTTAGATGTGAATGAAGAAAATGATTGTA
ACATTGCACTGTACGAACACACAATTAATAAAGACACCACCCACTTGGAGATTGAACCCTTCACTCTTCT
CGGCGTGTGTGCTGGACTTATCCCATACCCTCACCATAACCAGTCACCGAGAAACACTTATCAGTGTGCC
ATGGGGAAACAAGCCATGGGTACTATAGGATACAACCAGCGAAACAGAATTGATACTCTCATGTATCTAC
TAGCATATCCACAAAAACCCATGGTTAAGACAAAAACCATTGAATTGATAGAATTTGAGAAACTGCCAGC
TGGACAGAATGCAACAGTTGCTGTGATGAGCTATAGTGGCTATGATATTGAAGATGCTCTTGTTTTAAAC
AAGGCCTCTTTAGACAGAGGCTTTGGGCGTTGCCTTGTATATAAAAATGCTAAATGTACGTTGAAACGAT
ACACCAATCAGACTTTTGATAAAGTGATGGGGCCCATGTTGGATGCTGCTACAAGGAAACCTATCTGGCG
ACATGAAATCTTAGATGCAGATGGTATTTGTTCTCCAGGTGAGAAAGTAGAAAACAAACAAGTGCTTGTA
AATAAGTCCATGCCCACAGTGACTCAGATTCCTTTGGAAGGAAGTAATGTACCACAGCAACCACAGTACA
AAGATGTACCCATAACCTACAAAGGAGCAACAGACTCATATATTGAAAAAGTGATGATATCTTCAAATGC
TGAAGATGCTTTTCTGATCAAAATGCTGCTGAGACAGACAAGGCGTCCAGAAATTGGAGACAAATTCAGC
AGTCGTCATGGGCAAAAAGGTGTTTGTGGCTTGATCGTCCCCCAGGAAGACATGCCATTTTGTGATTCTG
GCATCTGTCCGGACATCATCATGAACCCACACGGCTTCCCATCACGAATGACGGTGGGGAAGCTCATTGA
GCTGCTGGCTGGCAAGGCCGGTGTGCTGGACGGCAGATTCCACTACGGCACTGCGTTTGGAGGCAGTAAA
GTGAAGGATGTGTGTGAGGACCTCGTTCGCCATGGTTATAACTACTTGGGGAAAGACTATGTTACATCCG
GCATCACAGGTGAGCCCTTAGAAGCATACATCTATTTTGGCCCCGTGTACTATCAGAAGCTGAAACACAT
GGTGCTAGATAAAATGCATGCCCGGGCCCGGGGCCCACGAGCCGTCCTTACCAGGCAACCCACTGAAGGA
CGGTCTCGTGATGGTGGCTTGCGTCTCGGGGAAATGGAACGTGACTGTTTAATCGGTTATGGAGCCAGTA
TGCTTTTGCTAGAGAGACTAATGATTTCAAGTGATGCCTTTGAGGTTGATGTCTGTGGGCAGTGTGGACT
TCTGGGGTATTCTGGCTGGTGCCATTACTGCAAGTCATCCTGCCACGTGTCTTCCCTCCGTATTCCGTAT
GCCTGCAAGCTGCTCTTCCAGGAACTACAGTCTATGAACATCATCCCCAGGTTAAAACTGTCCAAGTACA
ATGAATGA

Translation (1075 aa):
MKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIR
NALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGA
VGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPS
LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVM
VRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQ
DQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGM
LCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGV
IRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGY
RNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCA
MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLN
KASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLV
NKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS
SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK
VKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEG
RSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPY
ACKLLFQELQSMNIIPRLKLSKYNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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