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Report for CCDS52987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52987.1 Public Mus musculus X Slc35a2 23 108 98 CCDS HistoryNCBI Gene:22232Re-query CCDS DB by CCDS ID:52987.1Re-query CCDS DB by GeneID:22232See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115660.11 ENSMUSP00000111324.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115660.11Link to Ensembl Protein Viewer:ENSMUSP00000111324.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000115660Re-query CCDS DB by Protein ID:ENSMUSP00000111324
Original member Current member EBI ENSMUST00000155967.2 ENSMUSP00000146730.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155967.2Link to Ensembl Protein Viewer:ENSMUSP00000146730.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155967Re-query CCDS DB by Protein ID:ENSMUSP00000146730
Original member NCBI NM_001083937.1 NP_001077406.1 Updated not alive Link to Nucleotide Sequence:NM_001083937.1Link to Protein Sequence:NP_001077406.1Re-query CCDS DB by Nucleotide ID:NM_001083937Re-query CCDS DB by Protein ID:NP_001077406
Current member NCBI NM_001083937.2 NP_001077406.1 Accepted alive Link to Nucleotide Sequence:NM_001083937.2Link to Protein Sequence:NP_001077406.1Re-query CCDS DB by Nucleotide ID:NM_001083937Re-query CCDS DB by Protein ID:NP_001077406Link to BLAST:NP_001077406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077406.1 390 Q9R0M8 390 100% 0 0

Chromosomal Locations for CCDS 52987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7884343 7884433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7885749 7885931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7889612 7889763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7892140 7892886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGCAGCGGTTGGGGTTGGTGGATCTACCGCTGCGGCCGGGGCTGGGGCTGTGTCCTCGGGCGCGTTGG
AACCTGGGTCCACTACAGCGGCTCACCGGCGCCTCAAGTATATATCCTTAGCTGTGCTGGTGGTCCAGAA
TGCCTCCCTCATCCTCAGCATCCGCTACGCTCGCACACTGCCTGGGGACCGCTTCTTTGCCACCACTGCT
GTGGTCATGGCTGAAGTGCTCAAAGGTCTCACCTGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAATG
TGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGT
GCCCTCTCTCATCTATACCTTGCAGAATAACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTGCCACT
TTCCAGGTGACATATCAGCTGAAGATCCTGACTACAGCGCTCTTCTCTGTGCTCATGTTGAATCGCAGCC
TCTCACGCCTGCAGTGGGCCTCTCTGCTGCTGCTCTTCACTGGTGTCGCCATTGTCCAGGCACAGCAAGC
TGGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGGCTTAGCGGCAGTTGTGGCCTCCTGT
CTCTCCTCAGGCTTCGCTGGGGTCTACTTTGAGAAGATCCTCAAAGGCAGCTCAGGTTCTGTGTGGCTTC
GTAACCTACAGCTCGGCCTCTTTGGCACAGCGCTGGGCCTGGTGGGGCTCTGGTGGGCTGAGGGCACCGC
CGTGGCCAGTCAAGGCTTCTTCTTTGGGTACACACCTGCTGTCTGGGGTGTAGTACTAAACCAAGCCTTT
GGTGGGCTTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTTTGCCACCTCCCTGT
CTATTGTGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCTTCCACCTGGACCCATTATTTGCCCTGGG
CGCTGGGCTCGTCATTGGTGCTGTCTACCTCTACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCG
GCCTCGGCCTCTGGGCCCTGCATTCACCAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTGTCTTCTC
GAGGAGACCTCACCACGGAGCCCTTTCTGCCAAAGTCAGTGCTGGTCAAGTGA

Translation (390 aa):
MAAVGVGGSTAAAGAGAVSSGALEPGSTTAAHRRLKYISLAVLVVQNASLILSIRYARTLPGDRFFATTA
VVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAAT
FQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIVQAQQAGGSGPRPLDQNPGAGLAAVVASC
LSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVASQGFFFGYTPAVWGVVLNQAF
GGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHLDPLFALGAGLVIGAVYLYSLPRGAVKAIAS
ASASGPCIHQQPPGQPPPPQLSSRGDLTTEPFLPKSVLVK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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