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Report for CCDS52949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52949.1 Public Mus musculus 9 Susd5 23 108 98 CCDS HistoryNCBI Gene:382111Re-query CCDS DB by CCDS ID:52949.1Re-query CCDS DB by GeneID:382111See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135338.2 ENSMUSP00000128826.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135338.2Link to Ensembl Protein Viewer:ENSMUSP00000128826.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135338Re-query CCDS DB by Protein ID:ENSMUSP00000128826
Original member Current member NCBI NM_001101510.1 NP_001094980.1 Accepted alive Link to Nucleotide Sequence:NM_001101510.1Link to Protein Sequence:NP_001094980.1Re-query CCDS DB by Nucleotide ID:NM_001101510Re-query CCDS DB by Protein ID:NP_001094980Link to BLAST:NP_001094980.1

Chromosomal Locations for CCDS 52949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114057545 114057644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114063956 114064133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114068757 114068875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114082421 114082609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114095637 114096910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGAGCGCGGGGCCACTATGGCCGGCGCCCGGCAGCCTGCCTGCGCTCTGCGCCGCGCTGCTCCTGCTGG
CTCTGCAGCCGCCCCCCGTGCGCGCCGAGGGGAAGCTCTTCATGCTGGGCTCTCAGAATGGCTCTCAGGG
CCTGGACCTGGAGGCAGCGAGGCTCTCCTGCAGGAGCAGGGGTGCCCACCTGGTGTCTGCTGCAGAGCTG
AAGAGAGTGGTCCGGGACTGTGCCTCCGCAGTGTGCACAACAGGCTGGCTGGCGGATGGCACCCTCGGGA
CGACCGTGTGTAGCAAAGGGAGTGGTGAACAGCCAGTCTCCAGAGCTGTGGACGTGAGAATTGACAGCCA
CCCAGTTCCTGGTGCTAAGTACAATGCTCTTTGTATTAAGGACGAAGAGAGACCGTGTGGAGACCCACCG
TCATTCCCACACACCATCCTCCAGGGTCGCACTGGCTTGGAGATGGGGGATGAGCTGCTGTACCTGTGTG
CACCAGGGTCCGTCCCAGGCCATCGGGAAACGGCCTTTACCTTGTTGTGCAACAGCTGTGGGGAGTGGTA
CGGACTGGTGCAAGCCTGCGGGAAAGATGAGGCCGAGGCCCACATTGACTATGAAGAAAATTTCCCTGAT
GACAGATCCGTGTCATTCAGGGAACTCATGGAAGACTCCCGGGCAGAGGGAGAAAAGGAAAAGGCTCAGG
AAGACGCCTCTGACGAGACACCAAAACAAGATCGTCTGGTCTTCACTTCTGTCTCTAAAGAAAACATAGC
CCAGGTAAAAGCCTTTGTGCCTACCACAGGCTCGCCAGGCGCTGGGGGCAGTGTGCGCACTGACTGGCCA
CGATCCCGCCTACACCGGAAGTACTCCCTCTGGTTTCCGGCCGAGACTTTCCACAAGCCAGAGCTGGGAA
AGGATGAGGGAGATGAGACCAAAGAGCCACTTCCTGCCAGAGACAATCACAGTGAAGAGAAACCGGCCCC
AGAGGAGTCTGAAACAAGGCTGGTCTATGCCACCACCTACAGCCCCTCAGAGCCATTTGTGGATAGGAAT
GACAGCAAGGCAGAGGACCCAGGGGTGAGCAGCAGCGACGATTCCTGGTTAGATGGCTACCCTGTGACAG
ATGGGGCTTGGAGGAAGGTAGAGGCTGGGCAGGAGGATGATGAGGACAAGGGGGATGGGTCAGTGGGACC
GGATGAAAGTGGCCTCACGACTCCTGATAAGGAGCCGGAGAATGTCACCGTCACACCTAGTGAATCCGTG
ATACACAGCTCGATCAGTCCATCTCAAATGCTCGACGTAGAAGCTCTGGTTCCAGGACCCATCAATGTGT
CTGAGACTGAGAGTTCCCATACCAGGGATGTTGATTCGACCAGTTCTCAATCAACCATACCCCGGAGAGT
CACCACACAGCCGTCACCCAAGGTCACCTCACCCCATGAACTGGCCAGCTCCACCCAAGAGACAGTAACA
ACAACCCTCCAGCCGACACATAAACGTACGCCCTCGACTGATGTGGAGGCCACCCAGCCTCCAGCAGGGG
TGACAGCCCCTGAGGTTCAGGATAACTTCCCTTATCTGTTGTCTGAGGACTTCTTGGGACAGGAGGGCCC
TGGGCCTGGTGCAAGTGAGAAGTTTCTTCCAACCTCGGCACCGTGTGTAGGGGATGAGTGTCCCAGCTTC
AGGAAAGGCCCGGTGATCGCCACTGTGGTCACCGTCCTGTGTCTACTGCTACTCCTGGTAGTCGCGGGAG
CCGTGTGGGGCTACCGCCGGTGCCAGCACAAGAGCTCTGTATACAAGCTGAACGTTGGGCAGCGGCAGGC
TAGACACTACCAGCAGCAGATTGAGATGGAGAAGGTGTAG

Translation (619 aa):
MSAGPLWPAPGSLPALCAALLLLALQPPPVRAEGKLFMLGSQNGSQGLDLEAARLSCRSRGAHLVSAAEL
KRVVRDCASAVCTTGWLADGTLGTTVCSKGSGEQPVSRAVDVRIDSHPVPGAKYNALCIKDEERPCGDPP
SFPHTILQGRTGLEMGDELLYLCAPGSVPGHRETAFTLLCNSCGEWYGLVQACGKDEAEAHIDYEENFPD
DRSVSFRELMEDSRAEGEKEKAQEDASDETPKQDRLVFTSVSKENIAQVKAFVPTTGSPGAGGSVRTDWP
RSRLHRKYSLWFPAETFHKPELGKDEGDETKEPLPARDNHSEEKPAPEESETRLVYATTYSPSEPFVDRN
DSKAEDPGVSSSDDSWLDGYPVTDGAWRKVEAGQEDDEDKGDGSVGPDESGLTTPDKEPENVTVTPSESV
IHSSISPSQMLDVEALVPGPINVSETESSHTRDVDSTSSQSTIPRRVTTQPSPKVTSPHELASSTQETVT
TTLQPTHKRTPSTDVEATQPPAGVTAPEVQDNFPYLLSEDFLGQEGPGPGASEKFLPTSAPCVGDECPSF
RKGPVIATVVTVLCLLLLLVVAGAVWGYRRCQHKSSVYKLNVGQRQARHYQQQIEMEKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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