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Report for CCDS52259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52259.1 Public Mus musculus 7 Zdhhc13 23 108 98 CCDS HistoryNCBI Gene:243983Re-query CCDS DB by CCDS ID:52259.1Re-query CCDS DB by GeneID:243983See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118927.7 ENSMUSP00000112498.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118927.7Link to Ensembl Protein Viewer:ENSMUSP00000112498.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118927Re-query CCDS DB by Protein ID:ENSMUSP00000112498
Original member Current member NCBI NM_028031.3 NP_082307.1 Accepted alive Link to Nucleotide Sequence:NM_028031.3Link to Protein Sequence:NP_082307.1Re-query CCDS DB by Nucleotide ID:NM_028031Re-query CCDS DB by Protein ID:NP_082307Link to BLAST:NP_082307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082307.1 622 Q9CWU2 622 100% 0 0

Chromosomal Locations for CCDS 52259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 48789111 48789137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48795901 48796046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48799829 48799951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48801307 48801384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48802916 48803060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48804350 48804414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48805190 48805352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48805569 48805694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48808793 48808926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48811325 48811425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48815452 48815576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48816420 48816482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48817146 48817239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48818637 48818720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48822570 48822727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48824634 48824731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48826869 48827007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGAGGGCCCGGGCCTGGGCTCGCAGTGCAGGAATCACAGCCATGGCTCCCACGTTCCAGGATTTGGGC
GACACGGCATCTGTGTACATGAAAACAAAGAACTTGCAAAAGCAAAAGAAATTCTTCCTCTTATAGAGGA
CTCGAGTAACTGTGACATTGTCAAAGCTACACAATATGGAATTTTTGAACGATGTAAAGAGCTGGTAGAA
GCAGGATATGATGTCAGACAACCAGACAGAGAAAATGTGTCTCTTCTTCACTGGGCTGCCATTAACAACA
GGCTGGAACTTGTAAAGTTTTATATTTCCAAAGGTGCTGTGATAGATCAGTTGGGTGGTGACCTAAATTC
AACTCCTCTTCACTGGGCCATCCGACAAGGGCATTTGCCTATGGTCATATTATTGCTCCAGCACGGTGCA
GACCCCACTCTGATTGATGGAGAGGGATTCAGCAGCATCCATCTGGCGGTCCTGTTTCAGCACATGCCCA
TCATAGCGTATCTCATCTCAAAGGGACAGAGTGTGAATATGACAGATGTCAATGGACAGACGCCGCTCAT
GCTATCGGCTTACAAAGTAATTGGGCCAGAACCAACTGGATTTCTTTTAAAGTTCAATCCCTCTCTCAGT
GTTGTTGATAAAACACATCAGAACACTCCTCTTCACTGGGCAGTTGCAGCAGGAAATGTCAGTGCAGTTG
ATAAGCTTTTGGAAGCTGGTTCTAGCCTGGACATCCGAAATGCTAAGGGAGAAACACCTCTTGATATGGC
TCTACAAAGTAAAAACCAGCTCATTAGTCACATGCTAAGAACAGAGGCCAAGATGAGAGCCAACAAACAG
TTTCGGCTTTGGCGATGGCTGCACAAATGCGAGCTCTTCCTGCTGCTGATACTCTCTATGATCACCCTGT
GGGCTGTTGGATACATCCTGGACTTCAATTCAGATTCTTGGCTTTTAAAAGGATGTCTTCTAGTAGCATT
GTTTTTTCTGACATCTTTGTTTCCAAGGTTTTTGGTTGGCTATAAGAACCTTGTGTACTTACCGACAGTC
TTTCTGCTAAGTTCCATTTTTTGGATATTTATGACTTGGTTCATCTTATTCTTTCCTGATACAGCAGGTA
GCCCTTTGTATTTTGCTTTTATTTTCAGCATCATGGCCTTTCTCTATTTTTTCTACAAGACTTGGGCAAC
TGATCCAGGCTTCACTAAGGCTTCGGAGGAAGAGAGGAAAGTGAATATCGTCACCCTAGCAGAGACTGGC
TCTCTGGACTTCAGAACATTTTGCACATCATGTCTTATAAGGAAGCCTTTAAGATCACTCCATTGCCACG
TGTGCAACTCCTGTGTGGCTCGCTTTGATCAGCACTGCTTTTGGACTGGACGCTGCATAGGTTTTGGCAA
CCATCATCATTACATCTTCTTCTTGCTTTCCCTTTCCATGGTATGTGACTGGATCATATATGGATCTTTC
GTCTACTGGTCAAATCATTGTGCCACAACATTCAAGGAAGATGGACTATGGACCTACCTCAATCAGATAG
TGGCCTGTTCTCCCTGGGTTCTGTATATCTTCATGCTAGCAGCTTTCCACTTCTCATGGTCAACATTTTT
ATTAATAAATCAACTCTTTCAGATTGCATTTCTGGGCCTAACCTCCCATGAGAGAATCAGCCTCTTAAAG
CAAAGCAGGCACATGAAACAGACATTGTCCCTCAGGAAAACACCATACAACCTCGGATTCACACAGAACC
TGGCAGATTTCTTTCAGTGTGGCTGCTTTGGCTTAGTGAAGCCCTGCATCATAGATTGGACATCCCAGTA
CACCATGGTTTTCCACCCAGCCAAAGAGAAAGTCCTTCGCTCTGTATGA

Translation (622 aa):
MEGPGLGSQCRNHSHGSHVPGFGRHGICVHENKELAKAKEILPLIEDSSNCDIVKATQYGIFERCKELVE
AGYDVRQPDRENVSLLHWAAINNRLELVKFYISKGAVIDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGA
DPTLIDGEGFSSIHLAVLFQHMPIIAYLISKGQSVNMTDVNGQTPLMLSAYKVIGPEPTGFLLKFNPSLS
VVDKTHQNTPLHWAVAAGNVSAVDKLLEAGSSLDIRNAKGETPLDMALQSKNQLISHMLRTEAKMRANKQ
FRLWRWLHKCELFLLLILSMITLWAVGYILDFNSDSWLLKGCLLVALFFLTSLFPRFLVGYKNLVYLPTV
FLLSSIFWIFMTWFILFFPDTAGSPLYFAFIFSIMAFLYFFYKTWATDPGFTKASEEERKVNIVTLAETG
SLDFRTFCTSCLIRKPLRSLHCHVCNSCVARFDQHCFWTGRCIGFGNHHHYIFFLLSLSMVCDWIIYGSF
VYWSNHCATTFKEDGLWTYLNQIVACSPWVLYIFMLAAFHFSWSTFLLINQLFQIAFLGLTSHERISLLK
QSRHMKQTLSLRKTPYNLGFTQNLADFFQCGCFGLVKPCIIDWTSQYTMVFHPAKEKVLRSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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