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Report for CCDS51980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51980.1 Public Mus musculus 7 Sbk2 23 108 98 CCDS HistoryNCBI Gene:381836Re-query CCDS DB by CCDS ID:51980.1Re-query CCDS DB by GeneID:381836See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 51980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032598.13 ENSMUSP00000032598.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032598.13Link to Ensembl Protein Viewer:ENSMUSP00000032598.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032598Re-query CCDS DB by Protein ID:ENSMUSP00000032598
Original member Current member EBI ENSMUST00000182214.7 ENSMUSP00000138504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182214.7Link to Ensembl Protein Viewer:ENSMUSP00000138504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182214Re-query CCDS DB by Protein ID:ENSMUSP00000138504
Original member Current member NCBI NM_001146329.2 NP_001139801.1 Accepted alive Link to Nucleotide Sequence:NM_001146329.2Link to Protein Sequence:NP_001139801.1Re-query CCDS DB by Nucleotide ID:NM_001146329Re-query CCDS DB by Protein ID:NP_001139801Link to BLAST:NP_001139801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139801.1 362 P0C5K1 362 100% 0 0

Chromosomal Locations for CCDS 51980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4957081 4957713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4958830 4959032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4962931 4963183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGCCAGGCAAACAGTCAGAAGACAAGCCAATGGAAGTGTCAACTGTGGAGGATGGAGGTGATGAAGGCC
TGGGAGGCCTAACGGTAGAGGAGCTGCAGCAGGGGCAGGAGGCTGCTCTGGCCTTGGAGGACATGATGGC
TCTGAGTGCCCAGACCCTGGTCCAAACTGAGGTGGAAGAGCTGTACGAGGAAGTGCGTCCCCTGGGCCAG
GGCCGGTTCGGCCGTGTCCTGCTGGTTACTCACCGCCAGAAAGGAACACCCCTGGCGCTGAAGCAGCTCC
CGAAGCAATCCACTTCCCTCCGTGGCTTCCTGTATGAGTTCTGCGTGGGCCTCTCACTTGGCACACATTC
TGCCATCGTGACAGCCTATGGCATTGGCATTGAGTCAGCCAATTCCTACAGCTTCCTGACAGAACCTGTC
CTCCATGGGGACCTAATCACCTTCATCCAGCCCAAGGTGGGTCTCCCACAGCCAGCAGCCCAGCGCTGTG
CAGCCCAACTGGCCTCTGCCCTGGAACACATTCACTCGCATGGCCTGGTGTACCGGGACTTGAAGCCAGA
GAATGTGCTGGTGTGTGACCCAGCCTGCCAGCGCGTCAAGCTGACAGACTTCGGCCACACCCGGCCCCGA
GGGACCCTGCTCCGACTCACTGGGCCACCTATCCCCTACACTGCCCCTGAGCTCTGTGCCCCACCACCCC
TCCCCGAGGGACTACCCATCCAACCTTCCCTGGATGCCTGGGCCCTAGGGGTCCTGATCTTCTGCCTCCT
TACTGGCTACTTCCCCTGGGACCAGCCCCTGGTGGAGGTTGACCCTTTCTTTGAGGACTTTCTCATCTGG
CAGGCTTCTGGTCAGCCCCAAGACCGGCCACAGCCCTGGTATAGCCTGTCACCTGCAGCAGACACTCTCC
TATGGGGGCTGCTAGATCCTCACCCCCGGAAGAGGAACCCTGTGGGCTCCATCAAGAGCTATCTAGGCCA
ACCCTGGAAGCAGAGGGAAGGGGAGGCTGAGGAATTGGCAACGGAGCTGAGAGAAGATGGGTGGAGAGGA
GGGCAGGAGGCTGCAAAGGGGGAGCAACCTGCATGCTGA

Translation (362 aa):
MPGKQSEDKPMEVSTVEDGGDEGLGGLTVEELQQGQEAALALEDMMALSAQTLVQTEVEELYEEVRPLGQ
GRFGRVLLVTHRQKGTPLALKQLPKQSTSLRGFLYEFCVGLSLGTHSAIVTAYGIGIESANSYSFLTEPV
LHGDLITFIQPKVGLPQPAAQRCAAQLASALEHIHSHGLVYRDLKPENVLVCDPACQRVKLTDFGHTRPR
GTLLRLTGPPIPYTAPELCAPPPLPEGLPIQPSLDAWALGVLIFCLLTGYFPWDQPLVEVDPFFEDFLIW
QASGQPQDRPQPWYSLSPAADTLLWGLLDPHPRKRNPVGSIKSYLGQPWKQREGEAEELATELREDGWRG
GQEAAKGEQPAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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