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Report for CCDS51354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51354.1 Public Mus musculus 4 Pramel20 23 108 98 CCDS HistoryNCBI Gene:329986Re-query CCDS DB by CCDS ID:51354.1Re-query CCDS DB by GeneID:329986See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105765.9 ENSMUSP00000101391.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105765.9Link to Ensembl Protein Viewer:ENSMUSP00000101391.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105765Re-query CCDS DB by Protein ID:ENSMUSP00000101391
Original member Current member EBI ENSMUST00000105774.1 ENSMUSP00000101400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105774.1Link to Ensembl Protein Viewer:ENSMUSP00000101400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105774Re-query CCDS DB by Protein ID:ENSMUSP00000101400
Original member Current member NCBI NM_001007579.3 NP_001007580.1 Accepted alive Link to Nucleotide Sequence:NM_001007579.3Link to Protein Sequence:NP_001007580.1Re-query CCDS DB by Nucleotide ID:NM_001007579Re-query CCDS DB by Protein ID:NP_001007580Link to BLAST:NP_001007580.1

Chromosomal Locations for CCDS 51354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143571012 143571298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143571776 143572366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143572647 143573214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGAGCTTCCAGGCTCCACCCACACTCCTGAGCTTGGCAGTACAGAGCCTGGCGAAGAATGAAGCCTTGG
CCATCAATGCTCTGCAGGAGCTGCCCAGGGAGTTGTATCCACCACTCTTCAAGGCAGCCTTCATTGACAG
ACACACGAGGATACTGAAGGAAATGGTGGGAGCCTGGCCTTTACCTTGCCTCCCTGTGGGGGCACTGATG
AACGTCCCTGACATGACTGTATTGCAAGCTGTGCTGGATGGTGTAGACATGCAGCTGACAGGAAAATTTC
ACCCAAGAAAGAGGAAGCTTCAAGTGCTGGACCTGAGAAATGTGCACCATCACTTCTGGGATGTTTCAGC
TGGACCAGAGGATGGAGACGGCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACGCCCTCATAGA
TATGCACTGAGGAGACGTTTAAAGGTGGTCACTGACCTTTGCCTTCAGTTTTATCTAGAGGAACATCAAA
CTTACTTCTTGCAGTGGGCACAGGAGAGAAGAGGTTCCCTGAACCTGTGCTGTGTGAAGATGCAGATTAG
GGAATTGCCTATGCACACTGTAAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAA
TTGCATATAGGCTGGACTCAGTCCACACTGGCATGCTTTGCACCTTGCCTTGGTCAGATGAAGAATCTTC
GTAAACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTATGTACGTCAACAGACATACAGGA
GAAGAGTGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAACAGTCTCCGGCATCTCGACCTGGCTGGC
CTCTACTTTCTCACTGGCCACATGAATGAATTGCTCGGGTGTCTGAAGACTCCGCTGGAGTTCCTGTCAA
TTGCTCTCTGCAAGTACTCACAGTCAGACATGGAGTCCTTTGCCCAGTGTCAGAGTCTCCATCATCTCAA
ACATCTGCATTTGGCAGGTGTCATTTTGCATGATCTGAGTCTTGTGCCTCTCGGAATTTTCCTAGAAAAT
GTTGCAAACACTCTGAAGACCTTGGAATTAGAACATTGTAGGATGACAGACTCTCAGGTCAGCGCTTTTA
TCCCTGCCCTGAATAAGTGCTCTCAGCTCATCGAGGTCAACTTCTGTGACAATGACATCTCCATGCCTGT
CCTAACGAACCTTCTGCATCACACAGCCAACCTAAGCCAGCTGATCATGGAGCTTTATCCTGCTCCTCTG
GAGTGCTATGAAACCGGTTTTGTTCTTAGACCAGAGAGAATTGTCCAGCTTTCTTCTGAGCTCATGAACA
TACTTTGCACTGTTAGGCAGCCCCACTCTATCTGTTTTGCCTCTCAGTTATGCCTTATATGTTCACAGCG
CTGTACATATGGTCTGGAGACCAGACTTTGCCATTGTTGCCAGTAA

Translation (481 aa):
MSFQAPPTLLSLAVQSLAKNEALAINALQELPRELYPPLFKAAFIDRHTRILKEMVGAWPLPCLPVGALM
NVPDMTVLQAVLDGVDMQLTGKFHPRKRKLQVLDLRNVHHHFWDVSAGPEDGDGSAETVCQKQKATRPHR
YALRRRLKVVTDLCLQFYLEEHQTYFLQWAQERRGSLNLCCVKMQIRELPMHTVRKILQIFQPYCIEELE
LHIGWTQSTLACFAPCLGQMKNLRKLHLTLVHEKLFTFLCTSTDIQEKSVTKFISQFSKLNSLRHLDLAG
LYFLTGHMNELLGCLKTPLEFLSIALCKYSQSDMESFAQCQSLHHLKHLHLAGVILHDLSLVPLGIFLEN
VANTLKTLELEHCRMTDSQVSAFIPALNKCSQLIEVNFCDNDISMPVLTNLLHHTANLSQLIMELYPAPL
ECYETGFVLRPERIVQLSSELMNILCTVRQPHSICFASQLCLICSQRCTYGLETRLCHCCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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