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Report for CCDS51301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51301.1 Public Mus musculus 4 Sh3d21 23 108 98 CCDS HistoryNCBI Gene:66938Re-query CCDS DB by CCDS ID:51301.1Re-query CCDS DB by GeneID:66938See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097891.3 ENSMUSP00000095501.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097891.3Link to Ensembl Protein Viewer:ENSMUSP00000095501.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097891Re-query CCDS DB by Protein ID:ENSMUSP00000095501
Original member Current member NCBI NM_001162533.1 NP_001156005.1 Accepted alive Link to Nucleotide Sequence:NM_001162533.1Link to Protein Sequence:NP_001156005.1Re-query CCDS DB by Nucleotide ID:NM_001162533Re-query CCDS DB by Protein ID:NP_001156005Link to BLAST:NP_001156005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156005.1 665 Q7TSG5-2 665 99.8496% 0 1

Chromosomal Locations for CCDS 51301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126150725 126150796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126150877 126150934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126151017 126151873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126152024 126152118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126152206 126152258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126152341 126152434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126160468 126160510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126161335 126161421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126161523 126161623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126161735 126161780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126161968 126162023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126162176 126162266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126162453 126162571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126162802 126162865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126162966 126163123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126163225 126163228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGAGGTCCTGGTCCTGGCCAGATACCGAGCGCAGACGGAGGACGAGCTGAGTCTGGCTCCGGGGGACG
TGATCCGGCAGGTGTGCGCGGGGCCCGCTCGGGGCTGGCTGCTTGGGGAGTTGCGGGGCCGCCGCGGTCG
CTTCCCCAAGCGCCTGGTGCAGGAGATTCCGGAGGCCCTGCGGGGCGTCACCGAGTCCAGACCGCGCTTT
CCGCGCCGTAGTCGCCGTCACCCCATCAACTCTCGGGACCCCCAAAGATGGTGCAGAGTGAACTTCAACT
ACAGCCCAGAGCAGGCAGACGAGCTGACGCTTCAAACTGGGGAGATTTTGGAAGTGATAAAGGAGATTGA
GGACGGCTGGTGGCTGGGAGAGAAGAACGGGCAGTTGGGAGCCTTCCCATCCAACTTTGTGGAATTGCTG
GACAGTGGGCCCCCAAGCCTTGGAAATACAGACATACCGCCAATTACCCCAAATTCACAGAGGCCTCCTA
AGTTGAGCAACTTGACATATGACAGCCCTCCAGACTACCTGCGGACAGTCTCCTGCCCTGAGACCTGCAG
GGTCCTATTTGACTACCAACCCGAGGCCCCAGATGAGCTGGCACTGCAGAAGGGGGACCTGGTGAAAGTT
CTGAGAAAGACAACTGAGGATAAGGGCTGGTGGGAAGGAGAATGCCAAGGCAGAAGAGGAGTTTTTCCTG
ACAACTTTGTCATCCCACCGCCCCCAATCAGGAAGCTGATCCCTCGGAAAATTATTTCTCGGGAATCAGC
TCCTATTAAGGAAACAAAGAAACTGATGCCTAAATCATCTCTACCTACTGTAAAGAAGCTGGCAGCAGCG
GCCTCTGCACCGGGCAGAGCCAAGACACTTTCAACACCCAGTGGAGACAGCCAGAAACGCCCCTCCCGGA
ACTCTGGCTTCAATGGCAGCTGCCTCAATGGGGGACCCAGGCAGCCTGGGAGAAAGGGATCCAGAACCCA
GGCTTCCCAACAGCACTCTGCATCCAGTCAGGAGGATGAACAGAAAAGCCCAGGAAAGGGCCCCTCCAGG
AGTAAAACCCCGACTCCAGAGAAGACTCGACTTCCAGATAAGGTCCTTGCCCCAGAGACGATCCCGGCTC
CTGACAAAGTCTCCATTCCAAAGGACCCCGTTCCAAAGAAAGCCCCAGATTCTGACAAAATTCCTGCTAC
AGAGGATACCACTCTGGACAAGGCTGGCACTCCAGAGAGCACCCTTTCTGGGAATAAGCCAGCTAAGGAT
GAAGCCCTTGACCTGAAGATGGCCCTCCATGAGGACACTGCCCCTGCATTAGTAAAGATCTTGACTCCAG
AGCACATGATTTTTAAAAAGGAGCCTTCTAGAGACAACGATCAATGCCAGCACTTGCCTCAGGGGGGATC
CACACAGAGGCCTGAGTCTCCTGCACCCTCAAATAACATCCAGGTGCCAGGAGAGTACTCCCCACCGCCT
GACTCCTCAGAGAGGTCCTGCTGTCGCGTGAGACAGGTGAACGGCTCCTTCCCAGCCCAGTCCAAGGCTG
AGGATGTGTCTGCCATGGAGGAGGCCAATTTTTTAGAGGAGCCACTAGCCAAAGATGAGAGGACCCTAAA
CAAGGCACTCCCCAAAAAGCTGCCTTCTGAAAGGGCGGGTCCCCAAAAGCAGGTGCTTCCCCAAGAGTCA
GCCCCCACCCCCCAAGTGCCACACACTATCCAGCAGATGCCAGTCCCTGAAGAAGCTCCCACACTTCATC
CCTTGACCCCACTAACCTCTCCCAAGAGCAAGAATGACCGCATGGATGTGTTGGAATCCTTAAAGGAAGA
GGTGGGGTTGCTAAGAAGCCGGCTGGAGCTTCTGGAGTTGAAGCTGGAACAGAAGATGGGGGATGTCTGG
GAGGAGCTGAAGACTGAGACGCTCCTGTCGCCGGAGGTTCAGATGATGCAGAGGAACCGGAAATCCTTCA
AACACGCAGAGACACAGACGGAAACACAGACAGAATGA

Translation (665 aa):
MEVLVLARYRAQTEDELSLAPGDVIRQVCAGPARGWLLGELRGRRGRFPKRLVQEIPEALRGVTESRPRF
PRRSRRHPINSRDPQRWCRVNFNYSPEQADELTLQTGEILEVIKEIEDGWWLGEKNGQLGAFPSNFVELL
DSGPPSLGNTDIPPITPNSQRPPKLSNLTYDSPPDYLRTVSCPETCRVLFDYQPEAPDELALQKGDLVKV
LRKTTEDKGWWEGECQGRRGVFPDNFVIPPPPIRKLIPRKIISRESAPIKETKKLMPKSSLPTVKKLAAA
ASAPGRAKTLSTPSGDSQKRPSRNSGFNGSCLNGGPRQPGRKGSRTQASQQHSASSQEDEQKSPGKGPSR
SKTPTPEKTRLPDKVLAPETIPAPDKVSIPKDPVPKKAPDSDKIPATEDTTLDKAGTPESTLSGNKPAKD
EALDLKMALHEDTAPALVKILTPEHMIFKKEPSRDNDQCQHLPQGGSTQRPESPAPSNNIQVPGEYSPPP
DSSERSCCRVRQVNGSFPAQSKAEDVSAMEEANFLEEPLAKDERTLNKALPKKLPSERAGPQKQVLPQES
APTPQVPHTIQQMPVPEEAPTLHPLTPLTSPKSKNDRMDVLESLKEEVGLLRSRLELLELKLEQKMGDVW
EELKTETLLSPEVQMMQRNRKSFKHAETQTETQTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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