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Report for CCDS50611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50611.1 Public Mus musculus 2 Zfp385b 23 108 98 CCDS HistoryNCBI Gene:241494Re-query CCDS DB by CCDS ID:50611.1Re-query CCDS DB by GeneID:241494See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111830.8 ENSMUSP00000107461.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111830.8Link to Ensembl Protein Viewer:ENSMUSP00000107461.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111830Re-query CCDS DB by Protein ID:ENSMUSP00000107461
Original member Current member NCBI NM_001113400.1 NP_001106871.1 Accepted alive Link to Nucleotide Sequence:NM_001113400.1Link to Protein Sequence:NP_001106871.1Re-query CCDS DB by Nucleotide ID:NM_001113400Re-query CCDS DB by Protein ID:NP_001106871Link to BLAST:NP_001106871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106871.1 368 Q8BXJ8-2 368 100% 0 0

Chromosomal Locations for CCDS 50611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77411925 77412140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77413954 77414055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77414573 77414751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77415730 77415975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77450151 77450313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77476735 77476845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77503540 77503629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGATGCAGCCTTCGCTGGACATCAAACCGTTCATGTCTTTTCCAGTGGACAGTAGCTCTGCCGTGGGGC
TCTTTCCAAACTTTAACACAATGGACCCTGTGCAGAAAGCAGTCATTAACCACACATTTGGAGTCTCCAT
TCCCCCGAAGAAGAAACAAGTTATTTCCTGTAACGTCTGTCAGCTTCGCTTTAACTCGGATAGCCAGGCC
GAGGCCCACTACAAAGGAAGTAAACATGCCAAGAAGGTCAAAGCTCTAGAGGCAACGAAAAATAAACCCA
AAATGGTTCCTTCCAAGGACAGCGCAAAGGCTAATCCCAGCTGCTCCATCAGGCCAGGCACAGGCGACAG
CTCTGACAAATCAGAAGACAAAGGGAAGATAAAAGCCACCAGTTCCAGTCAGCCCTCAGGCTCCGAAGGA
GGCTCCTTTCTCCTCAAATCTGGCACAACACCCCTGCCACTTGGAGCCATCGCTTCTCCCTCCAAGAGCA
CAAACGGCGCTCCAGGGTCTGTTGCTGAGTCAGAAGAAGAAAAAGCCAAAAAATTACTCTACTGCTCACT
ATGCAAGGTGGCTGTGAACTCCCTGTCACAGCTGGAGGCTCACAACACAGGATCTAAACACAAGACCATG
GTTGAGGCTCGTAATGGAGCTGGTCCAATTAAGTCCTATCCAAGACCTGGGTCAAGATTAAAGGTGCAGA
ACGGCAGTAAGGGCTCAGGACTACAGAACAAAATGTTTCATTGTGAGATCTGTGATGTTCACGTGAACTC
AGAGATTCAACTCAAACAGCACATTTCAAGCCGAAGGCATAAAGACCGCGTGGCAGGAAAACCGCTGAAG
CCGAAATACAGCCCCTACAACAAGCTGCAGCGGAGCCCAAGCATCTTAGCTGCAAAGCTTGCATTCCAGA
AAGATCTGATGAAGCCTCTGGCCCCTACGTTCCTGTCTTCACCCCTGGCGGCCGCAGCCGTGTCCTCTGC
GCTGTCACTGCCACCTCGGCCATCCGCCTCTCTGTTCCAGGCTGCAGCCATCCCTCCTGCGCTGCTGAGG
CCTGGCCACGGGCCCATCCGGGCCACGCCCGCCTCCATCCTCTTTGCCCCTTACTAA

Translation (368 aa):
MMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHTFGVSIPPKKKQVISCNVCQLRFNSDSQA
EAHYKGSKHAKKVKALEATKNKPKMVPSKDSAKANPSCSIRPGTGDSSDKSEDKGKIKATSSSQPSGSEG
GSFLLKSGTTPLPLGAIASPSKSTNGAPGSVAESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTM
VEARNGAGPIKSYPRPGSRLKVQNGSKGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLK
PKYSPYNKLQRSPSILAAKLAFQKDLMKPLAPTFLSSPLAAAAVSSALSLPPRPSASLFQAAAIPPALLR
PGHGPIRATPASILFAPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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