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Report for CCDS50475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50475.1 Public Mus musculus 19 Habp2 23 108 98 CCDS HistoryNCBI Gene:226243Re-query CCDS DB by CCDS ID:50475.1Re-query CCDS DB by GeneID:226243See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095948.10 ENSMUSP00000093641.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095948.10Link to Ensembl Protein Viewer:ENSMUSP00000093641.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095948Re-query CCDS DB by Protein ID:ENSMUSP00000093641
Original member Current member NCBI NM_146101.2 NP_666213.1 Accepted alive Link to Nucleotide Sequence:NM_146101.2Link to Protein Sequence:NP_666213.1Re-query CCDS DB by Nucleotide ID:NM_146101Re-query CCDS DB by Protein ID:NP_666213Link to BLAST:NP_666213.1

Chromosomal Locations for CCDS 50475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56287996 56288052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56298015 56298051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56308837 56308944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56310021 56310137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56311102 56311221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56311671 56311842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56312869 56312966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56313975 56314230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56315227 56315369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56316283 56316417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56317727 56317872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56319471 56319635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGTTGGTGTTCCGTGTCCTGCTGCTAATCGCCCTGGTGGGGAAGTCAGTCATTGGGCTCTCACTGATGT
CCTTCATTGCGCCCCCAGACCCAGATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCAT
CAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTGCACAAAAC
AAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTG
CCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAGTGCTTCCGGCATGCAGGCCAAACCCCTGCCA
GAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAG
GGGAAATTCTGTGAAATAGGTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGA
GTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACAT
GTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAGAAACCCAGATGGAGACCAC
AAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTC
CAGTGCCTGACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTC
CTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGC
AAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCT
GTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGACATAAACACCAAGCA
TCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAA
AAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTGCTTTGCTCAAGT
TAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCC
CTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAGGGGAAGGGTCCCGCCAG
CTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCA
TCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAGGGTGACTCGGG
GGGCCCTCTAACCTGTGAGAAGGATGGAACTTACTACGTCTACGGGATTGTAAGCTGGGGCCAGGAATGT
GGGAAGAAGCCAGGAGTCTACACTCAAGTCACCAAGTTCCTGAATTGGATAAAGACCACCATGCACAGGG
AGGCTGGCCTCTGA

Translation (517 aa):
MLVFRVLLLIALVGKSVIGLSLMSFIAPPDPDPCQSNPCEHGGDCIIRGDTFSCSCPAPFSGSRCQTAQN
KCKDNPCVHGDCLITQKHPYYRCACKYPYTGPDCSKVLPACRPNPCQNGGVCSRHRRRSRFTCACPDQYK
GKFCEIGPDDCYVGDGYSYRGKVSKTVNQNPCLYWNSHLLLQETYNMFMEDAETHGIAEHNFCRNPDGDH
KPWCFVKVNSEKVKWEYCDVTVCPVPDTPNPVESLLEPVMELPGFESCGKTEVAEHAVKRIYGGFKSTAG
KHPWQVSLQTSLPLTTSMPQGHFCGGALIHPCWVLTAAHCTDINTKHLKVVLGDQDLKKTESHEQTFRVE
KILKYSQYNERDEIPHNDIALLKLKPVGGHCALESRYVKTVCLPSDPFPSGTECHISGWGVTETGEGSRQ
LLDAKVKLIANPLCNSRQLYDHTIDDSMICAGNLQKPGSDTCQGDSGGPLTCEKDGTYYVYGIVSWGQEC
GKKPGVYTQVTKFLNWIKTTMHREAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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