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Report for CCDS49837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49837.1 Under review, update Mus musculus 16 Ccdc14 23 108 98 CCDS HistoryNCBI Gene:239839Re-query CCDS DB by CCDS ID:49837.1Re-query CCDS DB by GeneID:239839See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023532.6 ENSMUSP00000023532.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023532.6Link to Ensembl Protein Viewer:ENSMUSP00000023532.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023532Re-query CCDS DB by Protein ID:ENSMUSP00000023532
Original member NCBI NM_172824.3 NP_766412.2 Updated not alive Link to Nucleotide Sequence:NM_172824.3Link to Protein Sequence:NP_766412.2Re-query CCDS DB by Nucleotide ID:NM_172824Re-query CCDS DB by Protein ID:NP_766412
Current member NCBI NM_172824.4 NP_766412.3 Pending alive Link to Nucleotide Sequence:NM_172824.4Link to Protein Sequence:NP_766412.3Re-query CCDS DB by Nucleotide ID:NM_172824Re-query CCDS DB by Protein ID:NP_766412Link to BLAST:NP_766412.3

Chromosomal Locations for CCDS 49837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 34690658 34690831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34695591 34695643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34696813 34696885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34697106 34697175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34697267 34697386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34704829 34705047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34705161 34705255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34706387 34706897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34709524 34709665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34715338 34715408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34721439 34721657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34721737 34721869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34723010 34723934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGAGTCCCGGCGGTCCGCGGCCTTCTTCCCGGAAGCGGAAGCTCAGGGGGCGGGACAAGGGAGGTCCGG
ACATCTCGGCGGTTAATTCTTTTTTTCTCAAGTATTCGTTTCCCTACGCCTGGGCTCTTCTGAGGCTGAG
AGAAATGGTCAGGTCCGGATCTCGACCGGGCCAGGTGATATCTTCAGGAAGGCAACCTGGAGCTAAGTTA
CCAAATGGAAAGAAAGGGACCCACGTAAGAAAAATAGCACATTTTAATGTAGACTCCGCCTGTCCTGTTC
AATCTGATTCAGAAAGTCAGACGGACACTCTCCAGGGACTTGACGGTTGTGCTTCTTTGCTGCGGGACAT
TTTGAAAAATGAAGATTCAGGCTCAGAAATGGTATATTCGGAAAACAGATGCAATTCTAAACCTTTAGAA
GGCAGAAAGAACAGATCTAAAAAGAAAGGGCCTGAAAAACATGTTCCTTCAGTGGTCCGAAAGGAAATAT
TATCATCAGAAAATAGGAAATGGATATCTAATGAAGCTTCTACTGGGAGTGACACAGCACAGCGTTGGTC
ACTACAAGATCATTATAGAATGTACTCACCGATAATATACCAAGCCCTCTGTGAGCATGTGCAGACTCAA
ATGTCACTGATGAATAGCTTGGCTTTAAAAAATGGCCCCAATGGAATACATGCTGTGTGCCATACCATGT
CTAATTCAGGCTCTCAGGCAACACCACATTCTGGTTTTGGCTGTTCTCCTTCCGCTTCTGTCTGGCCACC
TCAGCAGCCATCCTGCCCCCTAATGGTCCACTCTGAAGTTCAGACTGATGCTGATAACCAGTTTGAATCA
CAAAGTCAAGCGACCTCTGTGAAGTACGGTGATGTTCCCAGGGATCCGTTTAGTGTCCATCCTGGAGTTG
CATGTGGCCTTCCCCACGCTGACAGTCCAGCTGTTGCAAAGAGTCGGCAGCTGGATCTTACGAGTTGTAT
TCTGCCCCAACAGAGAGCTCCCAAGGAAGCAGAGTTACTAAAGTGCTTCCAAACACACACGTCTCTGTTT
CCAGCTCACGGGAAGGACGCTCTCTCGGACAGTCAGGCATACCAAAGTCCCTCTCAGTTACAGCCAGCCT
TCTTGGCCACTAATGAAGAAAAATGTGCCAAAGAACAATTTGAAGAGGCCACAAATGAAGGAAAGCATTT
AAGCACACATGTGCAAGATGCAAAAATAGCCAAGAATGTGCAGCAGGCAGAAAATGTAAGCCAGACTGCT
GAAAAAATCAGACTTGCCAAGTGCTTGTTGGGAGAGCTCAAGGCCCTGATGGAAGAGGACTCCGAAGTTC
AGAGGTTGGTGACAGAAGTAGAGGCGTGCGTATCTGGACTTTCAGCAGTGAGCGGCCACCCAAATGTGGA
AGTTGAAATAGCCCTGGCCCTGCAGCCCCTGAGAAGTGAGAACGCTCAGCTGCGGAGGCAACTGAGAATT
TTGAATCAACGCCTCCGAGAACAAGAGAAAACCGAAAAGGGACCTGGTAACCTTGAATTGTTTTCCCTTC
AGTCGCTGAATATGTCGCTGCAGAATCAGCTGCAAGAGTCGCTGAAGAGCCAGGAGTTACTACAGAGTAA
AAATGAAGAGCTCTTAAAAGTGATAGAAAACCAGAAAGAGGAAAACAAAAAATTCACCACTTTATTTAAA
GACAAAGAGCAGACTCTGCTTCATAATAAACAGCAGTTTGACATTGAGATGACCAGGGTGAAGATGGAGT
TGGAGGAAGCCTTGGCCAATGAGAAGAACTTGCGGTTTAAGCTAGAGACTGCAGAAAAGGAAAGTCAGAT
ACTGGGAATAACACTGCGCCAGCGAGATGCTGAGGTTGCACGACTTAGAGAATTAACCAGAACTTTACAG
AGCAGCATGGCCAAGCTGCTCTCTGATCTCAGTATGGACACTGCGCGCTGCAGGATGGGGAATAGCCTCA
CCAAATCACTTCTCAATGTCTATGATCAACAACTTCAACAGGACCCAGCCCCTGCTCAGACTTCCATAAT
GAGCTACCTCAATAAATTAGAAACAAATCACAGCTTTATACATTCAAAGCTGCTTAACAATGAGGCAGCC
ATAGAGCCAGACAGACTCTGTGAAAGTGTGCTGCCCCCACAAAGGCCTCCCCATAGTGATGCGGGGACAG
CAGATGGGGGCTCTGCATCTGGAACTGTCTCTGCTGCTTCAGTGGAGGATTCCGATATGGACTGTGAAAC
CCTCACTGTAATAGAAGATGGGTGTAACGTGGACAGTACAGTTTATATCCCCTTTGCAAGAAACACTTCT
AAAAAGCACTCGCCACTTTGTAAGAGACTATCCCCCCAGCCAAAGCTGAGTGTTGCTGCAGCACAGCTAG
TCAGTGGCAGTGCACAGACCTCTAAAGGAGAAAGTAAGCCACGTGCACCTGCAGTTTGTTCCTCACGAAA
TGAAGCAGAAGATGCACCCGGAGATCTTTCCAGCACGTATGACACAGAGGACGTGCAGCTCCTCAGGAAA
ATCAAAGAAGCAATTGGTAAGATCCCTGCTGCTGCTGAGCACGCAAAGGAACAGGCCACACATCATGGCC
CATCAGCTCATCCCAGCCCCGGCGTTCCAGTGAAGGGCAGTATTGTTCCTGACAGCAGCTTTCTCAATTC
TGACTTGATGTCAGACTGGAGCATCTCCTCTTTCTCAACGTTCACGTCTCATGATGAACAGGACTTCAGA
AACGGCCTGGCAGCACTGGATGCCAATATTGCTCGACTTCAGAAGTCCTTAAAGACCGGCCTTCTGGAGA
AATGA

Translation (934 aa):
MSPGGPRPSSRKRKLRGRDKGGPDISAVNSFFLKYSFPYAWALLRLREMVRSGSRPGQVISSGRQPGAKL
PNGKKGTHVRKIAHFNVDSACPVQSDSESQTDTLQGLDGCASLLRDILKNEDSGSEMVYSENRCNSKPLE
GRKNRSKKKGPEKHVPSVVRKEILSSENRKWISNEASTGSDTAQRWSLQDHYRMYSPIIYQALCEHVQTQ
MSLMNSLALKNGPNGIHAVCHTMSNSGSQATPHSGFGCSPSASVWPPQQPSCPLMVHSEVQTDADNQFES
QSQATSVKYGDVPRDPFSVHPGVACGLPHADSPAVAKSRQLDLTSCILPQQRAPKEAELLKCFQTHTSLF
PAHGKDALSDSQAYQSPSQLQPAFLATNEEKCAKEQFEEATNEGKHLSTHVQDAKIAKNVQQAENVSQTA
EKIRLAKCLLGELKALMEEDSEVQRLVTEVEACVSGLSAVSGHPNVEVEIALALQPLRSENAQLRRQLRI
LNQRLREQEKTEKGPGNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKKFTTLFK
DKEQTLLHNKQQFDIEMTRVKMELEEALANEKNLRFKLETAEKESQILGITLRQRDAEVARLRELTRTLQ
SSMAKLLSDLSMDTARCRMGNSLTKSLLNVYDQQLQQDPAPAQTSIMSYLNKLETNHSFIHSKLLNNEAA
IEPDRLCESVLPPQRPPHSDAGTADGGSASGTVSAASVEDSDMDCETLTVIEDGCNVDSTVYIPFARNTS
KKHSPLCKRLSPQPKLSVAAAQLVSGSAQTSKGESKPRAPAVCSSRNEAEDAPGDLSSTYDTEDVQLLRK
IKEAIGKIPAAAEHAKEQATHHGPSAHPSPGVPVKGSIVPDSSFLNSDLMSDWSISSFSTFTSHDEQDFR
NGLAALDANIARLQKSLKTGLLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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