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Report for CCDS49286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49286.1 Public Mus musculus 13 Spata31d1d 23 108 98 CCDS HistoryNCBI Gene:238663Re-query CCDS DB by CCDS ID:49286.1Re-query CCDS DB by GeneID:238663See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052978.5 ENSMUSP00000128200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052978.5Link to Ensembl Protein Viewer:ENSMUSP00000128200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052978Re-query CCDS DB by Protein ID:ENSMUSP00000128200
Original member Current member NCBI NM_177711.3 NP_808379.2 Accepted alive Link to Nucleotide Sequence:NM_177711.3Link to Protein Sequence:NP_808379.2Re-query CCDS DB by Nucleotide ID:NM_177711Re-query CCDS DB by Protein ID:NP_808379Link to BLAST:NP_808379.2

Chromosomal Locations for CCDS 49286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 59725976 59729417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59730149 59730209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59730781 59730823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59731523 59731720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3744 nt):
ATGAAAAAGGTTCTCTCCATTCTCAATAGCTCCATTCTAACTAGCGCTAAGGAATCATGGTTGAGCATTG
GCTCCATCTTCGTGGACATTTACCCCAAATGCATCATTCTGAGTGTACTTGGGCTGCTGTTTTTGTTCCT
AAGGTACCTGATACTGAAACCCTTCTTACCCACACAGACCAGCCAAGGAGTCAGGAAGCAACAAGGCAGA
GCTAAGCGGGAAAGGAGAGCGTCATTTAATGAATTCAGAAACTTCCATGGAGAAGCTCGGGAGCGGAGGA
AGCTGCAAGCTGTTGTGCAAAGCCCCTGTGGGCAGCTCTACGACCCCTTCTACTTCCGGCAAGCGCTTTG
TCAGGATCCCCGTTGTGATGTGTGCAATGGAGCCACAGTGAAGGTCAGGCGACTGCTCTCATGGGCCAGC
CTAGAAGACTGCTCTGCCTCTGCATCCAGTATGGCTTCCATGGCCTCCACAGCTTCTGTGACTGAGGCCT
CATTCACTCTCTCTTCTTCCCTCTCCCCAAGCCCTTCGGGATATCAGCTCTCATCTTTTTCAGTTGCACC
TTCTCCCCCTCCTCCCTCCATTCTCTCAACTAGCACGTTCACCCCCTTGGAAGACACCCTTTTGGGCACA
CCACAGGGTGACTCTCTGCCACCAGAGCCCACTCTCACAAGCACTGGTTTCCCACTGGATCACCTCCTAC
CTCACCCACTTCCCAAGTCTCCTTCCGTGGCACATCCTGCAGCTCAGCAAACAGAAGGGCCTTTAAGACC
GGAAGACATTCTCTCCTTGGCTGGCAGCCATGGTGACCAGTTTCTCCATGCAACAACAACTTGTGATGCC
TTGCCAGTGTCCTACCAGCAGCAGCCTGGTGCTCAGAGCTCCTCCCCATCCCAGTTAAAATGCTTAGTTA
ACCAAGAGATACCCAACCACTGCTCTTCTGAAGATTTTTGGCGGGGACAAGCCTCACCCCATTTCACAGT
GCCCCAGAAAGTCCTGAAAATACTTGAGAGACAAGAGGAAAGCCAGGCTGACGTTCTTACACTGAAGGAC
AGGGAAGGAGAAGCAGAACCAACTGCTGAGCAGAACCTAGGAGCCTCCTTTCCCCTAGGGGGCAGCAGAG
TCATACTCAGCGAGCTCAATCCTCAGCAGGGGCTTGCTCAAGTGCAGAGCTCTGGGGGCCAGTTAGAGGC
CATGCCCATGCAGCACTTCTGGGGCCTCCCTTATCTCCACAGCGAGTCCATGAGCTGTATCACTACACTG
TCATCTCACTGCTCTTCCATGTGCATCTGGTTCAACAGGACCACAGACTCCCCGGCCCTGGCTCCCCCCT
CACCTCTGCCCTTGCCTGAGAGACAATCACAGACCTTGACTCAATCTCAGTACCAGAGCATCCAGCTTGC
CACACCCCACTCCCAGCTTCAAACACTCCCAGGGCCGTCACCGTCCTCTCAATCTCAGGTTAGGGTTTGC
GGTGTGTATTTCCGCAGATCCCAGGAGGCAAAAGCTCTATTGCAATCGGAAATCCACCACCTAGAGTACA
ACATGATGGCGAAAGACCCGGAGAGGGAGTGGGCTTTACCCTCTGTGGTCCAAAAACCTCAGGAAGAACT
TTCCCTCCTTCCTTCAAAGCTCTCCCTGGCCATAAAGTCCTCCAAGCTCCAAACTCCCAGGTCCGTTCCT
CCTAGAGACTTCCCCCTGGCTGACGGGTTCCAGAAGATGTTCGAGCAGCACCTTCGAAAGAGGCTCATCC
TACAGCGCTGGGGCCTGCCTCAGGGGATCTATAAGTCGCAGCTGTGGGCAAATCCTGACCCTTCAGAAGC
ATCTAAGAGCAGCTCTGGGCTCTCTGGCTTTAAGCACAAAGACAACAAAGCCTGGCCCAACACTGTGTCG
AACCAATCTGGAAGCCCCCAAGAGAAGTCTGTTTCTGTAGAGAGAAAAACAGTAAAAGCACACGAACAGA
CTCTAGAGATTATCCAAAAATATATCTGCAGTAACTCCAAGACTGCTCTAGACAACAGCCTGCCATCTGA
CCATGAGAACCTACAGGGCCACTCAGGCAGTCTGTCAGATCAATCTTCAGAGACCTCACAGGTAAGCCAA
TGTCGGAAAAAATTTGAAACTCCTCCGAAAGAACATTTGAAAAGCCACATCGATGGAACCAATGAGGATC
AGGTCCCTGTCACTCTGTCCAGATTAAAGCATCGTCCCCTTCATTTTAAGCCATGTGTGGGCAAGGAAGA
AAAAAAGGCTGAGAGACAGTCACCTTCTGATATCAAGGATGAAGATACCAAAAGCGTACACAGAATTACA
GTGCCTGGCGTGCAGCAGACATCTGTTGTCTTAGACACCACCATCCTGAAGGAGTCAGAAGCCAAAAAAC
CCAGCCCAGATGTGCCCAAAATGTTGGCTAAGGCTGGCCCCATGCCAGTGGGTAAGAGCCTAAGTTCTAG
CAAAATAGTCCAGGGGCCTCAAGGGACAAAGATGGATGACAAACACGTATTTGTATCCAACAAGGTCAGT
AACATAGTCAAAGAGCAGCTCGGTGGCCTTCAACCACGACCTACCAAGATCTCGAAAGCCAGCCAGTGCA
AGAGTGCTAAAGATGGAGATGGGAATACACCAAGCACACAAAGAACCCAGTTAGCTGGAAGAGCCCCGGA
AGGAATATCAGGTCCCCCGGACATTCAGGCATCTGACTTTAGTTGTCAGGTGACCAGGGAGGAGAAATCC
GAATCAGAAAACCGTCAGCCCATCCAAGCTTCAGAGCCCCCAAAAGTCATGCTCCCTGTCTCAGATAAAC
TCACTCACACACCTTTACCCATTCATGATCAGATGCCTTCCAGCGCTCTCACCAATGCAGTTCAGGTGCA
GCCACAGGAGCCTGAGATGCCTGCTCACTCCTTAGGCAAGGGTCTGAACAAGGACAGCCCTCAATCTGCC
AAGAGGTCGTGGAAAATAGAAGGGGTTGCAGGGCCTGAGACGTTACAACCCAGTGGGAAGATTCACCGTG
CGCAGGATAGCCCGACCCCGGGGAATCATGGGAAAAGACCGATCCCACCGTCACCGCCCGTGAAGGCCCT
GTCTCCTCCTGAGCATCACTTCAGGAAGCAGGTCAAACACTTTTTCCAGTGGCTTTCTCCTGACAGAAAA
TGCAAAGGACAGGAAGCACTCCTGAAAAGGGGCACTTCCCCACCGTCACCAGCACACGACCCGGAACAAA
AGGGGAGAGCTACCTTTCCTGGGAACACTGTAGCTCAGAAAGCCCTGAGAGACTTTGGGAAGGTCCCCAA
GGAGCAACCGGGGCACAGGCATGGTGCGGCAGATACCATGCGCCCCCGCGTGCCCGTATCTCCGCCCACC
AAGCCTGTAAAAACTAAGCCGAAGAGAGAGTATTGCGTCCCAACAGACCCAGTCCAGGGACGCCAGCTCC
ACCCCCCAGCACCGGTCTCTAAAGTGCCAAGTCCCAGGTTCCACAATCAGGCCGCTGCTTTTGTTGATCA
AAAGAGATGCGTGGCAGAAAGGGCCAGACAGCCCCAGAAATGTGAGGCTTTACAGCCTCGCCCATCCGCG
TCCCACAGAGAGTCAGAACTGCGCCAAAATCTCCTGTGGAGTCGAGCTGGGAAAGTTCCTCAGGGGACAC
CCCCCTTTGCTGTAGGGACTATGTTGGCCGACATGTCCCGGTTATGTGAACAGAAAATTCTGGCTCAGAA
TTTCAGAGGAAAAGCTTTTGTCCCCCAGAAATAA

Translation (1247 aa):
MKKVLSILNSSILTSAKESWLSIGSIFVDIYPKCIILSVLGLLFLFLRYLILKPFLPTQTSQGVRKQQGR
AKRERRASFNEFRNFHGEARERRKLQAVVQSPCGQLYDPFYFRQALCQDPRCDVCNGATVKVRRLLSWAS
LEDCSASASSMASMASTASVTEASFTLSSSLSPSPSGYQLSSFSVAPSPPPPSILSTSTFTPLEDTLLGT
PQGDSLPPEPTLTSTGFPLDHLLPHPLPKSPSVAHPAAQQTEGPLRPEDILSLAGSHGDQFLHATTTCDA
LPVSYQQQPGAQSSSPSQLKCLVNQEIPNHCSSEDFWRGQASPHFTVPQKVLKILERQEESQADVLTLKD
REGEAEPTAEQNLGASFPLGGSRVILSELNPQQGLAQVQSSGGQLEAMPMQHFWGLPYLHSESMSCITTL
SSHCSSMCIWFNRTTDSPALAPPSPLPLPERQSQTLTQSQYQSIQLATPHSQLQTLPGPSPSSQSQVRVC
GVYFRRSQEAKALLQSEIHHLEYNMMAKDPEREWALPSVVQKPQEELSLLPSKLSLAIKSSKLQTPRSVP
PRDFPLADGFQKMFEQHLRKRLILQRWGLPQGIYKSQLWANPDPSEASKSSSGLSGFKHKDNKAWPNTVS
NQSGSPQEKSVSVERKTVKAHEQTLEIIQKYICSNSKTALDNSLPSDHENLQGHSGSLSDQSSETSQVSQ
CRKKFETPPKEHLKSHIDGTNEDQVPVTLSRLKHRPLHFKPCVGKEEKKAERQSPSDIKDEDTKSVHRIT
VPGVQQTSVVLDTTILKESEAKKPSPDVPKMLAKAGPMPVGKSLSSSKIVQGPQGTKMDDKHVFVSNKVS
NIVKEQLGGLQPRPTKISKASQCKSAKDGDGNTPSTQRTQLAGRAPEGISGPPDIQASDFSCQVTREEKS
ESENRQPIQASEPPKVMLPVSDKLTHTPLPIHDQMPSSALTNAVQVQPQEPEMPAHSLGKGLNKDSPQSA
KRSWKIEGVAGPETLQPSGKIHRAQDSPTPGNHGKRPIPPSPPVKALSPPEHHFRKQVKHFFQWLSPDRK
CKGQEALLKRGTSPPSPAHDPEQKGRATFPGNTVAQKALRDFGKVPKEQPGHRHGAADTMRPRVPVSPPT
KPVKTKPKREYCVPTDPVQGRQLHPPAPVSKVPSPRFHNQAAAFVDQKRCVAERARQPQKCEALQPRPSA
SHRESELRQNLLWSRAGKVPQGTPPFAVGTMLADMSRLCEQKILAQNFRGKAFVPQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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