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Report for CCDS48821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48821.1 Public Mus musculus 11 Gas7 23 108 98 CCDS HistoryNCBI Gene:14457Re-query CCDS DB by CCDS ID:48821.1Re-query CCDS DB by GeneID:14457See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108682.8 ENSMUSP00000104322.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108682.8Link to Ensembl Protein Viewer:ENSMUSP00000104322.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108682Re-query CCDS DB by Protein ID:ENSMUSP00000104322
Original member NCBI NM_001109657.3 NP_001103127.1 Updated not alive Link to Nucleotide Sequence:NM_001109657.3Link to Protein Sequence:NP_001103127.1Re-query CCDS DB by Nucleotide ID:NM_001109657Re-query CCDS DB by Protein ID:NP_001103127
Current member NCBI NM_001109657.4 NP_001103127.1 Accepted alive Link to Nucleotide Sequence:NM_001109657.4Link to Protein Sequence:NP_001103127.1Re-query CCDS DB by Nucleotide ID:NM_001109657Re-query CCDS DB by Protein ID:NP_001103127Link to BLAST:NP_001103127.1

Chromosomal Locations for CCDS 48821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67586813 67586815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67603108 67603228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67629610 67629690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67643281 67643366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67652859 67652912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67660019 67660108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67662051 67662166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67665388 67665462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67670594 67670672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67674238 67674366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67675599 67675722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67681225 67681304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67682635 67682733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67683338 67683451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAAGCCTGGGATGGTCCCCCCTCCGCCAGGAGAGGAGAGCCAGACGGTCATCCTTCCACCCGGCTGGC
ACAGCTACTTGTCTCCTCAGGGCCGCCGTTACTATGTCAACACGACTACCAATGAGACCACCTGGGAACG
TCCCAGCAGTTCTCCTGGGATTTCAGCCAGCCCTGGCCCTCACAGGAGCTCTTTGCCTACAACAGTGAAT
GGATACCACGCATCAGGGACCCCGGCGCACCCTCCAGAGACTGCCCACATGAGTCTCCGAAAATCCACCG
GTGATTCCCAGAACCTGGGATCCTCATCGCCAGGCAGGAAACAGAGCAAGGAAAACACCATCACCATCAA
CTGTGTGACATTCCCTCACCCGGACACGATGCCTGAGCAACAGCTGCTCAAGCCCACCGAGTGGAGCTAC
TGTGACTACTTTTGGGCGGACAAGAAGGACCCACAAGGCAATGGCACGGTGGCTGGCTTTGAACTGCTGC
TGCAGAAGCAACTGAAAGGCAAGCAGATGCAGAAGGAGATGTCCGAGTTCATCCGGGAAAGGATAAAGAT
TGAAGAAGAATATGCAAAGAACCTGGCTAAGCTCTCTCAGAACTCCTTGGCTGCCCAGGAGGAAGGCTCC
TTGGGAGAGGCATGGGCCCAAGTAAAGAAGAGCCTGGCAGATGAGGCTGAAGTTCATCTCAAGTTCTCTG
CCAAGCTCCACAGCGAGGTGGAGAAACCCCTGATGAACTTCAGAGAGAACTTCAAGAAAGACATGAAAAA
GTGCGACCACCACATCGCTGACCTCCGTAAGCAGCTGGCAAGCCGCTATGCCTCAGTGGAGAAGGCCCGC
AAAGCCCTCACAGAGCGGCAGAAAGACCTGGAGATGAAGACCCAGCAGCTGGAGATCAAGTTGAGCAACA
AGACCGAGGAGGACATCAAGAAGGCACGGAGGAAGTCCACTCAGGCCGGAGATGACCTCATGCGCTGTGT
GGACCTCTACAACCAGGCCCAGTCCAAGTGGTTTGAAGAGATGGTGACGACCACACTGGAACTGGAGCGG
CTGGAGGTGGAGAGGGTGGAAATGATCCGACAACATCTGTGCCAGTACACACAGCTGCGGCACGAGACGG
ACATGTTCAACCAAAGCACAGTCGAGCCTGTGGACCAACTGCTGCGAAAAGTGGACCCAGCCAAAGACAG
AGAGCTATGGGTCAGAGAGCACAAAACAGGCAACATCCGCCCAGTGGACATGGAGATCTAG

Translation (416 aa):
MKPGMVPPPPGEESQTVILPPGWHSYLSPQGRRYYVNTTTNETTWERPSSSPGISASPGPHRSSLPTTVN
GYHASGTPAHPPETAHMSLRKSTGDSQNLGSSSPGRKQSKENTITINCVTFPHPDTMPEQQLLKPTEWSY
CDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFIRERIKIEEEYAKNLAKLSQNSLAAQEEGS
LGEAWAQVKKSLADEAEVHLKFSAKLHSEVEKPLMNFRENFKKDMKKCDHHIADLRKQLASRYASVEKAR
KALTERQKDLEMKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELER
LEVERVEMIRQHLCQYTQLRHETDMFNQSTVEPVDQLLRKVDPAKDRELWVREHKTGNIRPVDMEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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