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Report for CCDS48601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48601.1 Public Mus musculus 10 Gstt2 23 108 98 CCDS HistoryNCBI Gene:14872Re-query CCDS DB by CCDS ID:48601.1Re-query CCDS DB by GeneID:14872See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038257.6 ENSMUSP00000046324.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038257.6Link to Ensembl Protein Viewer:ENSMUSP00000046324.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038257Re-query CCDS DB by Protein ID:ENSMUSP00000046324
Original member Current member EBI ENSMUST00000220440.1 ENSMUSP00000151239.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220440.1Link to Ensembl Protein Viewer:ENSMUSP00000151239.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220440Re-query CCDS DB by Protein ID:ENSMUSP00000151239
Original member NCBI NM_010361.2 NP_034491.2 Updated not alive Link to Nucleotide Sequence:NM_010361.2Link to Protein Sequence:NP_034491.2Re-query CCDS DB by Nucleotide ID:NM_010361Re-query CCDS DB by Protein ID:NP_034491
Current member NCBI NM_010361.3 NP_034491.2 Accepted alive Link to Nucleotide Sequence:NM_010361.3Link to Protein Sequence:NP_034491.2Re-query CCDS DB by Nucleotide ID:NM_010361Re-query CCDS DB by Protein ID:NP_034491Link to BLAST:NP_034491.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034491.2 244 Q61133 244 100% 0 0

Chromosomal Locations for CCDS 48601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75831885 75832094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75832395 75832568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75832661 75832811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75833652 75833739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75834175 75834286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGGCTTGGAGCTCTACCTGGACCTGCTGTCACAACCCAGCCGCGCTGTCTACATCTTCGCCAAGAAGA
ATGGCATCCCCTTCCAGACGCGTACCGTGGATATACTCAAAGGGCAGCACATGAGCGAGCAATTCTCCCA
GGTGAACTGCTTAAACAAAGTTCCTGTACTCAAAGACGGAAGCTTCGTGTTGACCGAAAGCACAGCCATC
TTGATTTACCTGAGTTCCAAGTACCAGGTGGCAGACCACTGGTACCCGGCCGACCTACAGGCCCGTGCCC
AAGTCCACGAATACCTGGGCTGGCATGCCGACAACATCCGTGGTACTTTCGGAGTGCTCCTATGGACCAA
GGTGTTGGGGCCACTCATTGGGGTCCAGGTTCCCCAGGAGAAGGTGGAACGGAACAGAGATAGAATGGTC
CTGGTTCTGCAACAGCTGGAGGACAAGTTCCTCAGGGACAGGGCCTTCCTTGTTGGCCAGCAGGTGACGC
TAGCGGATCTCATGTCTCTGGAGGAGTTGATGCAGCCCGTGGCTCTTGGCTATAACCTGTTTGAGGGACG
GCCTCAGCTGACAGCATGGCGAGAGAGGGTGGAGGCGTTCTTGGGTGCTGAGCTGTGTCAGGAGGCTCAT
AGCACCATCCTGAGCATCCTGGGACAGGCAGCCAAGAAAATGTTACCAGTACCCCCTCCGGAGGTCCATG
CCAGCATGCAGCTTCGAATTGCTAGGATTCCTTGA

Translation (244 aa):
MGLELYLDLLSQPSRAVYIFAKKNGIPFQTRTVDILKGQHMSEQFSQVNCLNKVPVLKDGSFVLTESTAI
LIYLSSKYQVADHWYPADLQARAQVHEYLGWHADNIRGTFGVLLWTKVLGPLIGVQVPQEKVERNRDRMV
LVLQQLEDKFLRDRAFLVGQQVTLADLMSLEELMQPVALGYNLFEGRPQLTAWRERVEAFLGAELCQEAH
STILSILGQAAKKMLPVPPPEVHASMQLRIARIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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