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Report for CCDS47970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47970.1 Public Homo sapiens 9 SPATA31A5 24 110 108 CCDS HistoryNCBI Gene:727905Re-query CCDS DB by CCDS ID:47970.1Re-query CCDS DB by GeneID:727905See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47970.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437823.5 ENSP00000485628.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000437823.5Link to Ensembl Protein Viewer:ENSP00000485628.1Re-query CCDS DB by Nucleotide ID:ENST00000437823Re-query CCDS DB by Protein ID:ENSP00000485628
Original member Current member NCBI NM_001113541.3 NP_001107013.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113541.3Link to Protein Sequence:NP_001107013.1Re-query CCDS DB by Nucleotide ID:NM_001113541Re-query CCDS DB by Protein ID:NP_001107013Link to BLAST:NP_001107013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107013.1 1347 Q5VU36 1347 100% 0 0

Chromosomal Locations for CCDS 47970.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 60914436 60914624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60915823 60915880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60916449 60916509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60916765 60920500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4044 nt):
ATGGAGAATCTTCCCTTTCCTTTAAAATTACTTAGTGCCTCATCGCTAAACGCCCCCAGTTCCACACCAT
GGGTGTTGGATATCTTCCTCACTTTGGTGTTTGCCCTGGGGTTCTTCTTCCTATTACTCCCCTACTTATC
TTACTTCCGTTGTGATGACCCACCCTCACCATCGCCTGGGAAGAGAAAGTGTCCAGTAGGGCGGAGGCGG
AGGCCCAGAGGCAGGATGAAAAACCACAGTCTGAGAGCTGGTAGAGAGTGCCGGAGAGGCCTGGAGGAGA
CTTCGGACCTGCTTTCACAACTGCAGAGCCTCCTGGGGCCACACCTTGACAAAGGTGACTTTGGTCAGCT
CTCCGGTCCAGACCCCCCAGGTGAGGTGGGCGAAAGAGCACCTGATGGAGCCTCCCAGTCCTCTCATGAG
CCTATGGAAGATGCTGCTCCCATTCTCTCCCCGTTAGCTTCCCCGGATCCTCAAGCCAAGCATCCTCAGG
ATCTGGCCTCCACCCCATCACCAGGCCCAATGACCACCTCAGTCTCCTCCCTAAGTGCCTCCCAGCCACC
AGAACCTTCCCTTCCCCTAGAACACCCCTCACCCGAGCCACCTGCACTTTTCCCTCACCCACCACACACC
CCTGATCCTCTGGCCTGCTCTCTGCCTCCTCCAAAAGGCTTCACTGCTCCTCCCCTGCGGGACTCCACAC
TGATAACTCCATCTCACTGTGACTCAGTGGCATTTCCACTGGGCACCGTCCCTCAAAGCTTGTCTCCACA
TGAGGATTTGGTGGCTTCTGTCCCAGCCATCTCAGGCCTTGGTGGCTCAAACAGTCATGTTTCTGCCTCC
TCCCGGTGGCAGGAGACTGCCAGAACCTCGTGCGCCTTTAACTCATCAGTCCAGCAAGATCATCTTTCCC
GCCACCCACCAGAGACCTGTCAGATGGAAGCTGGTAGCCTGTTTTTGCTCAGCTCTGATGGCCAGAATGT
CGTGGGGATACAAGTCACAGAAACAGCCAAGGTCAACATTTGGGAAGAAAAAGAAAATGTTGGATCATTT
ACAAATCGAATGACCCCAGAAAAGCACTTAAATTCTTTGCGGAATTTGGCTAAATCATTGGATGCTGAGC
AGGACACCACAAACCCAAAACCCTTCTGGAACATGGGAGAGAACTCGAAACAGCTGCCCGGACCTCAGAA
GCTCTCAGATCCTAGGCTCTGGCAGGAAAGTTTTTGGAAGAATTATAGCCAGCTTTTCTGGGGCCTCCCC
TCTCTGCACAGCGAGTCCCTGGTGGCTAACGCCTGGGTAACTGACAGGTCTTATACTTTACAGTCTCCTC
CTTTCTTGTTCAATGAAATGTCCAATGTCTGCCCAATTCAAAGGGAGACTACAATGTCCCCACTGCTTTT
CCAGGCCCAGCCCCTGTCCCATCTGGGGCCCGAGTGCCAACCCTTTATTTCATCCACACCCCAATTCCGG
CCCACACCTATGGCTCAGGCCGAGGCTCAGGCCCATCTTCAATCTTCTTTCCCAGTCCTATCTCCTGCTT
TTCCATCCCTGATTCAGAACACTGGAGTAGCTTGCCCTGCATCGCAGAATAAAGTGCAAGCTCTCTCCCT
ACCTGAAACTCAGCACCCTGAATGGCCTTTGTTGAGGAGACAACTAGAAGGTAGGTTGGCTTTACCCTCT
AGGGTCCAAAAATCTCAGGACGTCTTTAGTGTCTCCACTCCTAACCTTCCCCAGGAAAGTTTGACATCCA
TTCTGCCTGAGAACTTTCCAGTCAGTCCTGAACTCCGGAGACAACTGGAGCAACACATAAAAAAGTGGAT
CATCCAACACTGGGGCAACCTGGGAAGGATCCAAGAGTCTCTGGATCTGATGCAGCTTCGGGATGAATCA
CCAGGGACAAGTCAGGCCAAGGGCAAACCCAGTCCCTGGCAGTCCTCCATGTCCACAGGTGAAGGCAGCA
AGGAGGCACAGAAGGTGAAGTTCCAGCTAGAGAGGGACCCGTGCCCACATCTGGGGCAAATTCTGGGTGA
GACCCCACAAAATCTATCCAGGGATATGAAAAGCTTCCCACGGAAGGTTCTGGGGGTGACTTCTGAGGAG
TTGGAAAGGAACTTGAGGAAGCCCTTGAGGAGTGACTCGGGAAGTGATTTATTAAGATGCACAGAGAGGA
CTCATATAGAAAACATCCTGAAAGCCCACATGGGCAGGAACTTGGGCCAGACCAACGAGGGCTTGATCCC
CGTGTGTGTGCGTCGATCCTGGCTTGCTGTCAACCAGGCTCTTCCCGTGTCCAACACCCATGTGAAAACC
AGCAATCTAGCAGCCCCGAAAAGTGGGAAAGCCTGTGTGAACACAGCCCAGGTGCTTTCCTTCCTCGAGC
CGTGTACTCAGCAGGGGTTGGGAGCCCATATTGTGAGGTTTTGGGCCAAACACAGGTGGGGTCTACCCCT
CAGGGTCCTCAAGCCCATTCAGTGCTTTAAACTGGAAAAGGTTTCATCCTTGTCCCTTACACAGCTTGCT
GGTCCCTCCTCAGCCACCTGTGAATCTGGGGCTGGCTCAGAAGTTGAGGTGGACATGTTCCTTAGAAAGC
CACCAATGGCAAGTCTGAGAAAGCAGGTGCTGACCAAAGCATCTGATCACATGCCAGAGAGTCTTCTGGC
CTCCTCACCTGCATGGAAGCAGTTCCAGAGGGCACCGCGAGGAATCCCATCTTGGAATGATCATGAACCC
TTGAAGCCTCCTCCAGCTGGACAGGAGGGCAGGTGGCCATCTAAGCCCCTCACGTACAGCCTCACAGGCA
GCATCCAGCAGAGCAGGAGCTTAGGAGCCCAATCTTCAAAGGCTGGAGAGACAAGGGAGGCAGTGCCACA
ATGCAGAGTCCCCTTGGAAACCTGTATGCTGGCAAACCTCCAAGCCACAAGTGAGGATGTGCATGGTTTC
GAGGCTCCAGGGACCAGCAAAAGCTCTCTACACCCTAGAGTGTCTGTCTCCCAAGATCCAAGAAAGCTGT
GTCTTATGGAGGAGGTTGTTAATGAATTTGAGCCTGGAATGGCCACAAAGTCAGAGACCCAGCCTCAAGT
TTGTGCCGCTGTTGTGCTCCTTCCAGATGGGCAAGCATCTGTTGTGCCCCACGCTTCAGAGAATTTGGTT
TCTCAAGTGCCCCAGGGCCATCTCCAGAGCATGCCTACTGGGAACATGCGGGCTTCCCAGGAGCTACATG
ACCTCATGGCAGCCAGAAGGAGCAAACTGGTGCACGAGGAGCCCAGAAACCCAAACTGTCAAGGCTCATG
CAAGAGCCAAAGGCCAATGTTTCCCCCTATTCACAAGAGTGAGAAGTCTAGGAAACCCAACTTAGAAAAA
CATGAAGAAAGGCTTGAAGGATTGAGGACTCCTCAACTTACCCCAGTCAGGAAAACAGAAGACACCCATC
AGGATGAAGGCGTCCAGCTACTGCCATCAAAGAAACAGCCTCCTTCAGTAAGCCCCTTTGGAGAAAACAT
CAAGCAAATTTTTCAGTGGATTTTTTCAAAGAAAAAAAGCAAGCCAGCACCAGTCACTGCTGAGAGCCAA
AAAACAGTAAAAAACAGATCACGTGTGTACAGCAGCAGTGCTGAAGCTCAGGGTCTCATGACGGCAGTTG
GACAAATGCTGGACGAGAAAATGTCACTTTGCCATGCGCGCCATGCCTCGAAGGTAAATCAGCACAAACA
GAAGTTTCAAGCCCCAGTCTGTGGGTTTCCCTGCAACCACAGGCACCTCTTCTACTCAGAACACGGCAGA
ATACTGAGCTATGCAGCCAGCAGTCAACAAGCCACTCTCAAGAGCCAGGGTTGTCCCAACAGAGACAGAC
AAATCAGAAATCAACAGCCCTTGAAAAGTGTGCGGTGCAACAATGAGCAATGGGGCCTGCGACATCCCCA
AATCTTGCACCCCAAGAAAGCTGTATCCCCAGTCAGTCCCCCTCAGCACTGGCCGAAGACATCCGGTGCC
TCTAGCCACCATCACCACTGTCCAAGGCACTGTCTTCTTTGGGAAGGTATCTGA

Translation (1347 aa):
MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKRKCPVGRRR
RPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHE
PMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHT
PDPLACSLPPPKGFTAPPLRDSTLITPSHCDSVAFPLGTVPQSLSPHEDLVASVPAISGLGGSNSHVSAS
SRWQETARTSCAFNSSVQQDHLSRHPPETCQMEAGSLFLLSSDGQNVVGIQVTETAKVNIWEEKENVGSF
TNRMTPEKHLNSLRNLAKSLDAEQDTTNPKPFWNMGENSKQLPGPQKLSDPRLWQESFWKNYSQLFWGLP
SLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSHLGPECQPFISSTPQFR
PTPMAQAEAQAHLQSSFPVLSPAFPSLIQNTGVACPASQNKVQALSLPETQHPEWPLLRRQLEGRLALPS
RVQKSQDVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLMQLRDES
PGTSQAKGKPSPWQSSMSTGEGSKEAQKVKFQLERDPCPHLGQILGETPQNLSRDMKSFPRKVLGVTSEE
LERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVCVRRSWLAVNQALPVSNTHVKT
SNLAAPKSGKACVNTAQVLSFLEPCTQQGLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLA
GPSSATCESGAGSEVEVDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHEP
LKPPPAGQEGRWPSKPLTYSLTGSIQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQATSEDVHGF
EAPGTSKSSLHPRVSVSQDPRKLCLMEEVVNEFEPGMATKSETQPQVCAAVVLLPDGQASVVPHASENLV
SQVPQGHLQSMPTGNMRASQELHDLMAARRSKLVHEEPRNPNCQGSCKSQRPMFPPIHKSEKSRKPNLEK
HEERLEGLRTPQLTPVRKTEDTHQDEGVQLLPSKKQPPSVSPFGENIKQIFQWIFSKKKSKPAPVTAESQ
KTVKNRSRVYSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGR
ILSYAASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSPPQHWPKTSGA
SSHHHHCPRHCLLWEGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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