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Report for CCDS47229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47229.1 Public Homo sapiens 5 SERF1A 24 110 108 CCDS HistoryNCBI Gene:8293Re-query CCDS DB by CCDS ID:47229.1Re-query CCDS DB by GeneID:8293See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47229.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317633.14 ENSP00000321791.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317633.14Link to Ensembl Protein Viewer:ENSP00000321791.8Re-query CCDS DB by Nucleotide ID:ENST00000317633Re-query CCDS DB by Protein ID:ENSP00000321791
Original member Current member NCBI NM_022968.2 NP_075257.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022968.2Link to Protein Sequence:NP_075257.1Re-query CCDS DB by Nucleotide ID:NM_022968Re-query CCDS DB by Protein ID:NP_075257Link to BLAST:NP_075257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075257.1 62 O75920-2 62 100% 0 0

Chromosomal Locations for CCDS 47229.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 70900870 70900876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70901825 70901933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70907734 70907806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (189 nt):
ATGGCCCGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGG
GAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAGGGACTCTGAGATCATGCAAGAAAA
GCAGAAGGCAGCTAATGAGAAGAAGTCTATGCAGACAAGAGAAAAGTGA

Translation (62 aa):
MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQRDSEIMQEKQKAANEKKSMQTREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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