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Report for CCDS43596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43596.1 Public Homo sapiens 7 VPS37D 24 110 108 CCDS HistoryNCBI Gene:155382Re-query CCDS DB by CCDS ID:43596.1Re-query CCDS DB by GeneID:155382See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324941.5 ENSP00000320416.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324941.5Link to Ensembl Protein Viewer:ENSP00000320416.4Re-query CCDS DB by Nucleotide ID:ENST00000324941Re-query CCDS DB by Protein ID:ENSP00000320416
Original member Current member NCBI NM_001077621.2 NP_001071089.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077621.2Link to Protein Sequence:NP_001071089.1Re-query CCDS DB by Nucleotide ID:NM_001077621Re-query CCDS DB by Protein ID:NP_001071089Link to BLAST:NP_001071089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071089.1 251 Q86XT2 251 100% 0 0

Chromosomal Locations for CCDS 43596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 73667959 73668096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73669419 73669590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73670020 73670102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73671014 73671376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCA
CCGGGCAGCTCCGGGACCTGCTTCAGGATGAGCCCAAGCTGGACCGGATCGTGCGGCTCAGCAGGAAGTT
CCAGGGCCTGCAGCTGGAGCGTGAGGCCTGCCTGGCCTCCAACTACGCGCTGGCCAAGGAGAACCTGGCC
CTGCGGCCCCGCCTGGAGATGGGCCGGGCTGCCCTGGCCATCAAATACCAGGAGCTTCGTGAGGTGGCCG
AGAACTGCGCGGACAAGCTGCAGCGACTGGAGGAAAGCATGCATCGCTGGAGTCCCCACTGCGCGCTGGG
CTGGCTGCAGGCTGAGCTAGAAGAGGCGGAGCAGGAGGCAGAGGAGCAGATGGAGCAGCTGCTGCTCGGG
GAGCAAAGCCTGGAGGCCTTCCTGCCTGCCTTCCAGCGTGGCCGCGCCCTGGCCCACCTGAGGCGGACGC
AGGCAGAGAAGCTGCAGGAGCTGCTGCGGCGTCGGGAGCGTTCTGCCCAGCCGGCCCCCACCTCGGCTGC
TGATCCCCCCAAATCCTTCCCGGCTGCAGCTGTCCTGCCCACTGGGGCCGCCCGGGGGCCACCAGCAGTG
CCCCGGAGCCTGCCCCCCTTGGACTCCCGCCCAGTGCCCCCACTGAAGGGCTCCCCCGGGTGCCCCCTCG
GCCCGGCCCCCCTGCTGAGCCCTCGGCCCTCGCAGCCAGAGCCCCCCCACCGGTAG

Translation (251 aa):
MYRARAARAGPEPGSPGRFGILSTGQLRDLLQDEPKLDRIVRLSRKFQGLQLEREACLASNYALAKENLA
LRPRLEMGRAALAIKYQELREVAENCADKLQRLEESMHRWSPHCALGWLQAELEEAEQEAEEQMEQLLLG
EQSLEAFLPAFQRGRALAHLRRTQAEKLQELLRRRERSAQPAPTSAADPPKSFPAAAVLPTGAARGPPAV
PRSLPPLDSRPVPPLKGSPGCPLGPAPLLSPRPSQPEPPHR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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