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Report for CCDS40609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40609.1 Public Mus musculus 9 Pcsk7 23 108 98 CCDS HistoryNCBI Gene:18554Re-query CCDS DB by CCDS ID:40609.1Re-query CCDS DB by GeneID:18554See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039059.7 ENSMUSP00000047508.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039059.7Link to Ensembl Protein Viewer:ENSMUSP00000047508.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039059Re-query CCDS DB by Protein ID:ENSMUSP00000047508
Original member Current member EBI ENSMUST00000216672.1 ENSMUSP00000150393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216672.1Link to Ensembl Protein Viewer:ENSMUSP00000150393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216672Re-query CCDS DB by Protein ID:ENSMUSP00000150393
Original member Current member NCBI NM_001281934.1 NP_001268863.1 Accepted alive Link to Nucleotide Sequence:NM_001281934.1Link to Protein Sequence:NP_001268863.1Re-query CCDS DB by Nucleotide ID:NM_001281934Re-query CCDS DB by Protein ID:NP_001268863Link to BLAST:NP_001268863.1
Original member Current member NCBI NM_008794.2 NP_032820.2 Accepted alive Link to Nucleotide Sequence:NM_008794.2Link to Protein Sequence:NP_032820.2Re-query CCDS DB by Nucleotide ID:NM_008794Re-query CCDS DB by Protein ID:NP_032820Link to BLAST:NP_032820.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268863.1 770 Q61139 770 100% 0 0
NP_032820.2 770 Q61139 770 100% 0 0

Chromosomal Locations for CCDS 40609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45909272 45909736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45910375 45910509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45911084 45911249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45912951 45913041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45914330 45914384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45915088 45915226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45915988 45916088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45918762 45918929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45919246 45919353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45919792 45919894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45925911 45926067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45926734 45926828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45927575 45927668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45927887 45928004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45928511 45928828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGCCGAAAGGGAGGCAGAAAGTCCCACACTTGGATGCCCACCTGGGCCTGCCCATCTGCCTCTGGCTGG
AATTAGCCATCTTCTTTCTGGTTCCCCAGGTCATGGGCCTATCAGAGGCAGGTGGGCTTGACATCTTGGG
CACAGGGGGGCTGAGCTGGGCCGTACATCTGGACAGCCTAGAAGGTGAGAGGAAGGAAGAGAGTCTGACG
CAACAGGCCGATGCTGTGGCCCAGGCAGCAGGGCTTGTGAATGCTGGGCGCATTGGAGAACTCCAGGGGC
ACTACCTCTTTGTCCAGCCTACTGGGCATAGGCAAGCCATGGAGGTGGAGGCCATGCGGCAACAGGCAGA
GGCTGTGTTAGCCAGGCATGAAGCTGTGCGCTGGCACTCGGAGCAAACGCTGCTGAAGAGGGCCAAGCGC
AGTATCCACTTCAATGATCCCAAGTACCCTCAACAGTGGCACCTGAATAATCGGCGGAGCCCAGGAAGAG
ACATCAATGTGACAGGTGTGTGGGAGCGAAATGTAACTGGGCGTGGGGTGACAGTGGTGGTGGTGGATGA
CGGAGTGGAACACACCGTCCAGGACATCGCACCCAACTACAGTCCAGAGGGAAGTTATGACCTCAACTCT
AATGACCCAGATCCCATGCCCCACCCTGATGAGGAGAATGGTAACCACCATGGGACCCGGTGTGCAGGAG
AAATTGCAGCTGTGCCCAACAACAGCTTCTGTGCAGTGGGTGTGGCCTACGGGAGCCGAATAGCAGGTAT
CCGGGTGCTGGATGGACCACTTACTGACAGTATGGAGGCTGTGGCGTTCAACAAGCACTATCAGATCAAT
GACATCTACAGCTGCAGCTGGGGCCCAGATGATGATGGGAAGACAGTGGATGGTCCTCATCAGCTCGGAA
AGGCTGCCTTACAACATGGAGTGATGGCTGGTCGCCAAGGCTTTGGAAGTATCTTTGTGGTTGCCAGTGG
TAATGGGGGCCAGCACAATGACAACTGCAACTATGATGGCTATGCCAACTCCATCTACACTGTCACCATA
GGAGCTGTGGATGAGGAGGGACGGATGCCTTTTTATGCAGAGGAGTGTGCCTCCATGCTGGCAGTCACCT
TCAGTGGTGGAGACAAGATGCTGCGGAGCATTGTGACCACTGACTGGGACCTTCAGAAGGGCACTGGCTG
CACTGAAGGCCACACAGGAACCTCAGCTGCAGCTCCTCTGGCAGCTGGAATGATAGCCCTCATGCTGCAG
GTGCGGCCCTGCCTCACATGGCGGGATGTACAGCACATAATTGTCTTCACAGCCATCCAGTATGAAGATC
ATCATGCAGACTGGCTCACCAATGAGGCTGGCTTCAGCCACAGCCATCAGCATGGTTTCGGCCTGCTCAA
CGCTTGGAGACTTGTCAATGCAGCCAAGATCTGGACATCTGTCCCTTACTTAGCCTCCTATGTCAGCCCC
ATGCTGAAAGAAAATAAGGCTGTTCCGAGGTCCCCCCACTCTCTGGAGGTGCTATGGAATGTCAGCAGGA
CGGACCTGGAGATGTCGGGGCTGAAGACCTTGGAACATGTGGCAGTGACAGTCTCCATCACTCACCCACG
ACGTGGCAGCTTAGAACTGAAACTGTTTTGTCCCAGTGGCATGATGTCTTTGATCGGCGCGCCCCGCAGC
ATGGACTCGGATCCTAATGGCTTCAATGCTTGGACCTTTTCCACTGTGCGGTGCTGGGGGGAAAGAGCAA
GAGGCGTCTACAGACTGGTTATCAGGGATGTAGGAGATGAGCCGCTCCAGATGGGCATCCTCCAGCAGTG
GCAGCTGACCCTGTATGGCTCCATGTGGAGTCCAGTAGACATCAAGGACAGACAAAGTCTCTTAGAAAGT
GCTATGAGTGGAAAATACCTGCATGATGGCTTCACCCTGCCTTGCCCACCTGGGCTGAAAATCCCTGAGG
AGGATGGCTACACCATTACCCCTAACACACTCAAGACCCTTGTGCTGGTAGGCTGCTTCAGTGTCTTCTG
GACTATTTACTACATGCTAGAAGTGTGCCTGAGCCAGAGGAACAAGGCTTCCACCCATGGCTGCAGGAAG
GGATGCTGCCCCTGGGCCCCACGAAGGCAAAACTCCAAGGATGCAGGGACAGCACTAGAATCAATGCCAC
TGTGCAGCAGCAAGGACCTGGATGGAGTGGATTCAGAGCATGGGGACTGCACAACTGCATCTAGCTTCCT
GGCCCCAGAGCTGGATTGTCCTCCACACCAACCCCCAGACCTGCTGCAGGGGAAGAGCGGGCAGATTTGC
TGA

Translation (770 aa):
MPKGRQKVPHLDAHLGLPICLWLELAIFFLVPQVMGLSEAGGLDILGTGGLSWAVHLDSLEGERKEESLT
QQADAVAQAAGLVNAGRIGELQGHYLFVQPTGHRQAMEVEAMRQQAEAVLARHEAVRWHSEQTLLKRAKR
SIHFNDPKYPQQWHLNNRRSPGRDINVTGVWERNVTGRGVTVVVVDDGVEHTVQDIAPNYSPEGSYDLNS
NDPDPMPHPDEENGNHHGTRCAGEIAAVPNNSFCAVGVAYGSRIAGIRVLDGPLTDSMEAVAFNKHYQIN
DIYSCSWGPDDDGKTVDGPHQLGKAALQHGVMAGRQGFGSIFVVASGNGGQHNDNCNYDGYANSIYTVTI
GAVDEEGRMPFYAEECASMLAVTFSGGDKMLRSIVTTDWDLQKGTGCTEGHTGTSAAAPLAAGMIALMLQ
VRPCLTWRDVQHIIVFTAIQYEDHHADWLTNEAGFSHSHQHGFGLLNAWRLVNAAKIWTSVPYLASYVSP
MLKENKAVPRSPHSLEVLWNVSRTDLEMSGLKTLEHVAVTVSITHPRRGSLELKLFCPSGMMSLIGAPRS
MDSDPNGFNAWTFSTVRCWGERARGVYRLVIRDVGDEPLQMGILQQWQLTLYGSMWSPVDIKDRQSLLES
AMSGKYLHDGFTLPCPPGLKIPEEDGYTITPNTLKTLVLVGCFSVFWTIYYMLEVCLSQRNKASTHGCRK
GCCPWAPRRQNSKDAGTALESMPLCSSKDLDGVDSEHGDCTTASSFLAPELDCPPHQPPDLLQGKSGQIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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