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Report for CCDS40597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40597.1 Public Mus musculus 9 Mfrp 23 108 98 CCDS HistoryNCBI Gene:259172Re-query CCDS DB by CCDS ID:40597.1Re-query CCDS DB by GeneID:259172See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 40597.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034654.8 ENSMUSP00000034654.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034654.8Link to Ensembl Protein Viewer:ENSMUSP00000034654.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034654Re-query CCDS DB by Protein ID:ENSMUSP00000034654
Original member Current member NCBI NM_147126.3 NP_667337.1 Accepted alive Link to Nucleotide Sequence:NM_147126.3Link to Protein Sequence:NP_667337.1Re-query CCDS DB by Nucleotide ID:NM_147126Re-query CCDS DB by Protein ID:NP_667337Link to BLAST:NP_667337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_667337.1 584 Q8K480-1 584 100% 0 0

Chromosomal Locations for CCDS 40597.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44101893 44101946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102034 44102136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102251 44102364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102466 44102639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44102782 44102995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44103217 44103347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44103458 44103583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44103694 44103770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44104581 44104729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44105152 44105300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44105405 44105515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44106032 44106159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44106243 44106467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGAAGGACTATGACGACGTCATCCTCCGTCCAGAGGCGAGTGAGTTGAGCAAGACAGAGTTCTGTAATC
CTGCTTTCGACCCGGAAGCAGGGCCATCCTGCCCTCCACCAGCGTTACAGAGGGATGTCGGCAGCCGGCT
CCAAGCCCCCTGGCATGCCCAGCGTCTCCGGGGGCTACAGCCCGACTGCCACTTCTCCTGGTTCTGTATT
CTGCTTCTCAGTGGCCTGCTGCTCCTGCTGCTGGGGCTACTGGTGGCTGTCATCCTGGCTCAGTTGCAGG
CTACATCCCTCCCCAGGACTACCAAGAACCCACTGCTCACCCGAGGCCTCACCCCCATGGGTGTCATTCC
CAGCACCACCCCTAACACCACCACCACCACCACCACTACCACCCCAGCAAGGACAGGGCAGCAGGAGGCA
GCCATGAGCCCTACACACCAGACCACCTGTGGAGGCCTCCTTCCTGGTCCCAGTGGTTTCTTCAGCAGCC
CTAACTACCCAGACCTCTACCCACCCCTCAGCCACTGTGTCTGGCATATCCAGGTAGCCGCGGGCCAGAC
AATACAGCTCAAGATTCAAGCCCTCAGCATAGAGAGTATGCTCACCTGTCTTTTTGATCGCTTGGAAATT
ATCTCAGAGCCTACAGGCCCTCTCCTCAGGGTGTGTGGTAAAACACCTCCTGCCACATTAAACACCAATA
CCAGCCACCTCCGTGTGTCCTTCGTCTCTGATAACGATGTGGAAGGGTCTGGTTTCCAGGCCTGGTACCA
AGCAGTGGCCCCTGGACATTGGAGCTGTGCCCATAATGAGTTCCACTGTGACCTTCTCCTCTGCCTGAAG
CGTGACTCTGTATGTGACGGTATTACCGAGTGTGCCGATGGCAGTGACGAGGCCAACTGCAGTGCCAAGA
CGTTGGGGTGTGGAGGGAACCTGACTGGGCTCTATGGCGTATTCTCTACCCCAAACTATCCACAGCACTA
CCCTCACCAACAGCTTTGCACCTGGTACATCGAAGTGCCTGTGGGATACGGGATAAGACTGGAGTTCCAC
AACTTCAGTCTGGAAGCACAGGCTGAGTGCAAGTTTGACTACGTGGAAGTGTACGAGGCCAGCAACCTGG
GAACCTTCAGCTTCCTGGGCAGGTTCTGTGGAGCAGAGCCACCACTCAACGTTGTCTCCTCGATGCACCA
GCTGGCTGTAATCTTCAAGACGGATCTTGGTATCAGCAGCGGGGGCTTTCTAGCCACCTACCAGGCCATC
AATACTACAGAGAGTGGGTGTCCCTGGGCAGAGTTCTGCCAGAGCGGAGGATATAGGGATCTGCAATGGA
TGTGTGACTTATGGAAAGACTGTGCAAATGACAGCAACGACAACTGCAGCAGCCACTTGTCCCCACAACC
AGACCTGACCTGTGAACCTGTCCAGGTGGAGATGTGCCTTGGACTAAGCTACAATACCACGGCCTTTCCT
AACATCTGGGTGGGCCTGGCCACGCAGACAGAGGTGACAGACATCCTCCGAGGCTACAAGAGTCTGACAA
GTCTACCCTGCTACCAGACTTTCCAGAGGTTCCTCTGTGGACTGCTTGTGCCTCGATGCACCTCACTGGG
CACTATCCTACCCCCTTGTCGTTCCGTCTGCCAGGCGGCGGAGCAGCAGTGCCAGTCTAGCCTGGCATTA
TTGGGCACCCCCTGGCCTTTCAACTGCAACAGGCTGCCCGTGGCAGCTAGCCTGGAAGCTTGCTCCCAGC
CCTGA

Translation (584 aa):
MKDYDDVILRPEASELSKTEFCNPAFDPEAGPSCPPPALQRDVGSRLQAPWHAQRLRGLQPDCHFSWFCI
LLLSGLLLLLLGLLVAVILAQLQATSLPRTTKNPLLTRGLTPMGVIPSTTPNTTTTTTTTTPARTGQQEA
AMSPTHQTTCGGLLPGPSGFFSSPNYPDLYPPLSHCVWHIQVAAGQTIQLKIQALSIESMLTCLFDRLEI
ISEPTGPLLRVCGKTPPATLNTNTSHLRVSFVSDNDVEGSGFQAWYQAVAPGHWSCAHNEFHCDLLLCLK
RDSVCDGITECADGSDEANCSAKTLGCGGNLTGLYGVFSTPNYPQHYPHQQLCTWYIEVPVGYGIRLEFH
NFSLEAQAECKFDYVEVYEASNLGTFSFLGRFCGAEPPLNVVSSMHQLAVIFKTDLGISSGGFLATYQAI
NTTESGCPWAEFCQSGGYRDLQWMCDLWKDCANDSNDNCSSHLSPQPDLTCEPVQVEMCLGLSYNTTAFP
NIWVGLATQTEVTDILRGYKSLTSLPCYQTFQRFLCGLLVPRCTSLGTILPPCRSVCQAAEQQCQSSLAL
LGTPWPFNCNRLPVAASLEACSQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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