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Report for CCDS40348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40348.1 Public Mus musculus 8 Sh3rf1 23 108 98 CCDS HistoryNCBI Gene:59009Re-query CCDS DB by CCDS ID:40348.1Re-query CCDS DB by GeneID:59009See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034060.6 ENSMUSP00000034060.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034060.6Link to Ensembl Protein Viewer:ENSMUSP00000034060.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034060Re-query CCDS DB by Protein ID:ENSMUSP00000034060
Original member NCBI NM_021506.2 NP_067481.2 Updated not alive Link to Nucleotide Sequence:NM_021506.2Link to Protein Sequence:NP_067481.2Re-query CCDS DB by Nucleotide ID:NM_021506Re-query CCDS DB by Protein ID:NP_067481
Current member NCBI NM_021506.3 NP_067481.2 Accepted alive Link to Nucleotide Sequence:NM_021506.3Link to Protein Sequence:NP_067481.2Re-query CCDS DB by Nucleotide ID:NM_021506Re-query CCDS DB by Protein ID:NP_067481Link to BLAST:NP_067481.2

Chromosomal Locations for CCDS 40348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 61225926 61226318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61329219 61329494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61329923 61330018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61349400 61349702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61353738 61353848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61361588 61361772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61363075 61363245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61372508 61372767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61374009 61374367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61384577 61384929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61393669 61393837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGGATGAGTCTGCCTTGTTGGACCTTCTGGAGTGCCCTGTGTGTCTAGAACGCCTGGATGCTTCCGCAA
AGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCTGTTTGCTGGGGATTGTGGGTTCCCGGAATGAACT
CAGATGTCCCGAATGCCGGACTCTTGTTGGCTCTGGGGTCGACGAGCTCCCCAGTAACATCCTACTGGTC
AGACTTCTGGATGGCATCAAGCAGAGGCCTTGGAAACCCGGCCCTGGTGGGGGCGGCGGGACCACCTGCA
CAAACACATTAAGGGCGCAGGGCAGCACTGTGGTTAATTGTGGCTCGAAAGATCTGCAGAGCTCCCAGTG
TGGACAGCAGCCTCGGGTGCAAGCCTGGAGCCCCCCAGTGAGGGGAATACCTCAGTTACCGTGTGCCAAA
GCATTATATAACTACGAAGGAAAAGAGCCCGGAGACCTTAAGTTCAGCAAAGGCGACATCATCATTCTGC
GCCGACAGGTGGATGAGAATTGGTACCACGGGGAAGTCAGCGGGGTCCACGGCTTTTTCCCCACCAACTT
CGTGCAGATCATCAAACCTTTACCTCAGCCCCCGCCTCAGTGCAAAGCACTTTACGACTTTGAAGTGAAA
GACAAGGAAGCTGACAAAGATTGCCTTCCCTTCGCAAAGGACGACGTACTGACCGTGATCCGCAGAGTGG
ATGAAAACTGGGCTGAAGGAATGCTGGCAGATAAAATAGGAATATTTCCAATTTCATACGTGGAGTTTAA
CTCAGCTGCCAAGCAGCTGATAGAGTGGGATAAGCCTCCCGTGCCAGGAGTGGACACGGCAGAATGCCCC
TCAGCGACGGCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAAGAACACCAGGAAGCGACACT
CCTTCACCTCCCTCACCATGGCCAACAAGTCTTCCCAGGGGTCCCAGAACCGCCACTCCATGGAGATCAG
CCCTCCTGTGCTCATCAGTTCCAGCAACCCCACAGCCGCAGCCCGCATCAGCGAACTGTCCGGGCTCTCC
TGCAGCGCCCCGTCTCAGGTCCATATAAGCACCACTGGGTTAATTGTGACCCCACCCCCTAGCAGCCCGG
TGACAACTGGCCCTGCGTTCACGTTCCCTTCAGATGTCCCCTACCAAGCTGCCCTTGGAAGTATGAATCC
TCCACTTCCCCCACCCCCTCTCCTGGCGGCCACCGTACTCGCCTCCACCCCGTCAGGCGCTACTGCTGCT
GTTGCTGCTGCTGCTGCCGCCGCCGCTGCTGGAATGGGACCCAGGCCTGTGATGGGGTCCTCTGAACAGA
TTGCACATTTACGGCCTCAGACTCGTCCCAGTGTATATGTTGCTATATATCCGTACACTCCCCGGAAGGA
AGACGAACTGGAGCTGAGGAAAGGGGAGATGTTTTTGGTGTTTGAGCGTTGCCAGGACGGCTGGTACAAA
GGGACATCGATGCATACCAGCAAGATAGGCGTTTTCCCTGGCAACTATGTGGCGCCCGTCACAAGGGCGG
TGACGAATGCCTCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTGACCATGGT
CAGCCCTTCCACTGCAGGAGGACCTACACAGAAGCCCCAAGGAAACGGCGTGGCCGGAAATCCCAGCGTC
GTCCCCACGGCTGTGGTGTCAGCAGCTCATATCCAGACAAGTCCTCAGGCTAAGGTCCTGCTGCACATGT
CTGGGCAGATGACAGTCAATCAGGCCCGCAATGCTGTGAGGACAGTTGCAGCACATAGCCAGGAACGCCC
CACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCATCCGTGGGCCTGCCC
CATCATTCTCTGGCCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCTGCCCACGGTGCTGCCGTCAGCA
TCAGTCGAACCAATGCCCCCATGGCCTGCGCTGCAGGGGCTTCTCTGGCCTCCCCAAATATGACCAGTGC
CGTGTTGGAGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCCCCACATCTCCAGAGAGT
GCTGCATCAGCGTGTGGGAACAGTTCAGCTGGGAAACCAGACAAGGACAGTAAGAAAGAAAAAAAGGGCC
TACTGAAGCTGCTTTCTGGTGCCTCCACCAAACGCAAGCCCCGAGTCTCCCCTCCAGCATCACCTACCCT
GGATGTGGAGCTGGGTGCTGGGGAGGCTCCCTTGCAGGGAGCAGTAGGTCCTGAGCTGCCGCTAGGGGGC
AGCCACGGCAGAGTGGGGTCATGCCCCACAGATGGTGATGGTCCAGTGGCCGCTGGAACAGCAGCCCTAG
CCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGGACTCCGCAGTGCCCATTGCTCCACCACCTCGCCA
GGCCTGCTCCTCCCTGGGCCCAGTCATGAATGAGGCCCGGCCTGTTGTTTGTGAAAGGCACAGGGTGGTG
GTTTCCTACCCTCCTCAGAGTGAGGCCGAACTTGAACTCAAGGAAGGAGATATTGTGTTTGTTCATAAGA
AACGAGAGGACGGCTGGTTCAAAGGCACGTTACAGAGGAATGGGAAGACTGGCCTTTTCCCAGGGAGCTT
TGTGGAAAACATCTGA

Translation (891 aa):
MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGSGVDELPSNILLV
RLLDGIKQRPWKPGPGGGGGTTCTNTLRAQGSTVVNCGSKDLQSSQCGQQPRVQAWSPPVRGIPQLPCAK
ALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVSGVHGFFPTNFVQIIKPLPQPPPQCKALYDFEVK
DKEADKDCLPFAKDDVLTVIRRVDENWAEGMLADKIGIFPISYVEFNSAAKQLIEWDKPPVPGVDTAECP
SATAQSTSASKHPDTKKNTRKRHSFTSLTMANKSSQGSQNRHSMEISPPVLISSSNPTAAARISELSGLS
CSAPSQVHISTTGLIVTPPPSSPVTTGPAFTFPSDVPYQAALGSMNPPLPPPPLLAATVLASTPSGATAA
VAAAAAAAAAGMGPRPVMGSSEQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWYK
GTSMHTSKIGVFPGNYVAPVTRAVTNASQAKVSMSTAGQASRGVTMVSPSTAGGPTQKPQGNGVAGNPSV
VPTAVVSAAHIQTSPQAKVLLHMSGQMTVNQARNAVRTVAAHSQERPTAAVTPIQVQNAACLGPASVGLP
HHSLASQPLPPMAGPAAHGAAVSISRTNAPMACAAGASLASPNMTSAVLETEPSGRTVTILPGLPTSPES
AASACGNSSAGKPDKDSKKEKKGLLKLLSGASTKRKPRVSPPASPTLDVELGAGEAPLQGAVGPELPLGG
SHGRVGSCPTDGDGPVAAGTAALAQDAFHRKTSSLDSAVPIAPPPRQACSSLGPVMNEARPVVCERHRVV
VSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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