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Report for CCDS40217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40217.1 Public Mus musculus 8 Abhd13 23 108 98 CCDS HistoryNCBI Gene:68904Re-query CCDS DB by CCDS ID:40217.1Re-query CCDS DB by GeneID:68904See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048216.5 ENSMUSP00000036730.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048216.5Link to Ensembl Protein Viewer:ENSMUSP00000036730.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048216Re-query CCDS DB by Protein ID:ENSMUSP00000036730
Original member Current member EBI ENSMUST00000139793.7 ENSMUSP00000116130.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139793.7Link to Ensembl Protein Viewer:ENSMUSP00000116130.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139793Re-query CCDS DB by Protein ID:ENSMUSP00000116130
Original member Current member NCBI NM_001081119.1 NP_001074588.1 Accepted alive Link to Nucleotide Sequence:NM_001081119.1Link to Protein Sequence:NP_001074588.1Re-query CCDS DB by Nucleotide ID:NM_001081119Re-query CCDS DB by Protein ID:NP_001074588Link to BLAST:NP_001074588.1
Original member Current member NCBI NM_026868.1 NP_081144.1 Accepted alive Link to Nucleotide Sequence:NM_026868.1Link to Protein Sequence:NP_081144.1Re-query CCDS DB by Nucleotide ID:NM_026868Re-query CCDS DB by Protein ID:NP_081144Link to BLAST:NP_081144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074588.1 337 Q80UX8 337 100% 0 0
NP_081144.1 337 Q80UX8 337 100% 0 0

Chromosomal Locations for CCDS 40217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 9987405 9988418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAAAAATCCTGGATGCTGTGGAGCTTCATTGAAAGATGGCTACTGGCCTTGGCGTCCTGGTCTTGGG
CTCTCTGCCGCATCTCTCTGTTACCTTTGATAGTGACTTTTCATCTGTATGGAGGCATTGTCTTACTTTT
GTTAATATTCGTATCAATTGCAGGTATCTTATATAAATTCCAAGATGTCTTGCTCTACTTTCCAGAACAG
CCATCTTCTTCCCGCCTTTATGTTCCCATGCCCACGGGTATTCCCCATGAAAACATTTTCATCAGAACCA
AAGATGGAGTGCGCCTGAATCTGATCTTGGTGAGATACACTGGAGACAATTCCCCCTACTGCCCGACCAT
AATTTATTTCCATGGAAATGCCGGCAACATAGGCCACAGGTTACCAAACGCACTGCTAATGCTGGTGAAC
CTCAGAGTGAATCTTGTGCTTGTGGATTACCGGGGGTACGGGAAGAGCGAAGGAGAGGCCAGTGAAGAAG
GGCTGTATTTGGATTCTGAAGCTGTGCTAGACTATGTCATGACGAGACCCGACCTCGATAAGACCAAGGT
TTTCCTTTTTGGCCGCTCCCTGGGAGGAGCAGTGGCCATTCACTTGGCTTCTGAGAATTCTCACAGGATT
TCAGCCATCATGGTGGAGAACACATTCCTAAGCATACCACACATGGCCAGCACTCTATTTTCATTCTTCC
CAATGCGTTACCTTCCTTTATGGTGCTATAAAAATAAGTTTCTGTCCTACAGAAAGATCTCCCAGTGCAG
GATGCCTTCTCTCTTCATCTCTGGCCTCTCTGACCAGTTGATTCCACCCGTGATGATGAAACAGCTCTAC
GAGCTCTCTCCATCCCGGACTAAGAGATTAGCCATTTTCCCAGATGGGACGCACAACGACACATGGCAGT
GCCAAGGCTACTTCACTGCACTAGAACAATTTATCAAGGAAGTGATCAAGAGTCATTCTCCCGAAGACAT
GACAAAAACATCATCCAATGTCACCATCATCTGA

Translation (337 aa):
MEKSWMLWSFIERWLLALASWSWALCRISLLPLIVTFHLYGGIVLLLLIFVSIAGILYKFQDVLLYFPEQ
PSSSRLYVPMPTGIPHENIFIRTKDGVRLNLILVRYTGDNSPYCPTIIYFHGNAGNIGHRLPNALLMLVN
LRVNLVLVDYRGYGKSEGEASEEGLYLDSEAVLDYVMTRPDLDKTKVFLFGRSLGGAVAIHLASENSHRI
SAIMVENTFLSIPHMASTLFSFFPMRYLPLWCYKNKFLSYRKISQCRMPSLFISGLSDQLIPPVMMKQLY
ELSPSRTKRLAIFPDGTHNDTWQCQGYFTALEQFIKEVIKSHSPEDMTKTSSNVTII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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